Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
Trim56Q80VI1 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC29.78■■■□□ 2.36
Trim56Q80VI1 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
Trim56Q80VI1 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
Trim56Q80VI1 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Trim56Q80VI1 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Trim56Q80VI1 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
Trim56Q80VI1 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC29.76■■■□□ 2.35
Trim56Q80VI1 Gm24970-201ENSMUST00000175582 82 ntBASIC29.75■■■□□ 2.35
Trim56Q80VI1 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Trim56Q80VI1 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC29.74■■■□□ 2.35
Trim56Q80VI1 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC29.74■■■□□ 2.35
Trim56Q80VI1 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC29.73■■■□□ 2.35
Trim56Q80VI1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
Trim56Q80VI1 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Trim56Q80VI1 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC29.71■■■□□ 2.35
Trim56Q80VI1 Gm43863-201ENSMUST00000203822 1192 ntBASIC29.7■■■□□ 2.35
Trim56Q80VI1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Trim56Q80VI1 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
Trim56Q80VI1 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
Trim56Q80VI1 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Trim56Q80VI1 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Trim56Q80VI1 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC29.66■■■□□ 2.34
Trim56Q80VI1 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Trim56Q80VI1 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
Trim56Q80VI1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
Trim56Q80VI1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
Trim56Q80VI1 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Trim56Q80VI1 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
Trim56Q80VI1 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC29.64■■■□□ 2.34
Trim56Q80VI1 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Trim56Q80VI1 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
Trim56Q80VI1 Zxda-201ENSMUST00000117281 2621 ntBASIC29.61■■■□□ 2.33
Trim56Q80VI1 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
Trim56Q80VI1 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
Trim56Q80VI1 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Trim56Q80VI1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
Trim56Q80VI1 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC29.59■■■□□ 2.33
Trim56Q80VI1 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
Trim56Q80VI1 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29.56■■■□□ 2.32
Trim56Q80VI1 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Trim56Q80VI1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.55■■■□□ 2.32
Trim56Q80VI1 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Trim56Q80VI1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Trim56Q80VI1 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
Trim56Q80VI1 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Trim56Q80VI1 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Trim56Q80VI1 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Trim56Q80VI1 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
Trim56Q80VI1 AC157572.2-201ENSMUST00000226970 908 ntBASIC29.52■■■□□ 2.32
Trim56Q80VI1 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.31
Trim56Q80VI1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Trim56Q80VI1 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Trim56Q80VI1 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
Trim56Q80VI1 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Trim56Q80VI1 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC29.48■■■□□ 2.31
Trim56Q80VI1 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
Trim56Q80VI1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Trim56Q80VI1 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC29.45■■■□□ 2.31
Trim56Q80VI1 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
Trim56Q80VI1 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Trim56Q80VI1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Trim56Q80VI1 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Trim56Q80VI1 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC29.43■■■□□ 2.3
Trim56Q80VI1 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.43■■■□□ 2.3
Trim56Q80VI1 Gm6206-201ENSMUST00000133472 2199 ntBASIC29.42■■■□□ 2.3
Trim56Q80VI1 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Trim56Q80VI1 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC29.4■■■□□ 2.3
Trim56Q80VI1 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Trim56Q80VI1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Trim56Q80VI1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Trim56Q80VI1 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Trim56Q80VI1 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.38■■■□□ 2.29
Trim56Q80VI1 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Trim56Q80VI1 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
Trim56Q80VI1 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
Trim56Q80VI1 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Trim56Q80VI1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.37■■■□□ 2.29
Trim56Q80VI1 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Trim56Q80VI1 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Trim56Q80VI1 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC29.36■■■□□ 2.29
Trim56Q80VI1 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC29.35■■■□□ 2.29
Trim56Q80VI1 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Trim56Q80VI1 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Trim56Q80VI1 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Trim56Q80VI1 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
Trim56Q80VI1 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.34■■■□□ 2.29
Trim56Q80VI1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Trim56Q80VI1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Trim56Q80VI1 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Trim56Q80VI1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC29.31■■■□□ 2.28
Trim56Q80VI1 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Trim56Q80VI1 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Trim56Q80VI1 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Trim56Q80VI1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
Trim56Q80VI1 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Trim56Q80VI1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.29■■■□□ 2.28
Trim56Q80VI1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Trim56Q80VI1 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Trim56Q80VI1 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 9.5 ms