Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
Ubr3Q5U430 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Ubr3Q5U430 Nkain2-201ENSMUST00000092602 558 ntBASIC31.78■■■□□ 2.68
Ubr3Q5U430 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC31.77■■■□□ 2.68
Ubr3Q5U430 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Ubr3Q5U430 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Ubr3Q5U430 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Ubr3Q5U430 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Ubr3Q5U430 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Ubr3Q5U430 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ubr3Q5U430 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Ubr3Q5U430 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.67
Ubr3Q5U430 Gm7432-201ENSMUST00000210343 879 ntBASIC31.7■■■□□ 2.67
Ubr3Q5U430 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
Ubr3Q5U430 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
Ubr3Q5U430 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Ubr3Q5U430 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Ubr3Q5U430 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Ubr3Q5U430 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC31.66■■■□□ 2.66
Ubr3Q5U430 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Ubr3Q5U430 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC31.63■■■□□ 2.65
Ubr3Q5U430 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC31.63■■■□□ 2.65
Ubr3Q5U430 Gm30346-201ENSMUST00000218641 1699 ntBASIC31.63■■■□□ 2.65
Ubr3Q5U430 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Ubr3Q5U430 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Ubr3Q5U430 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Ubr3Q5U430 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC31.62■■■□□ 2.65
Ubr3Q5U430 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Ubr3Q5U430 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Ubr3Q5U430 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Ubr3Q5U430 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Ubr3Q5U430 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ubr3Q5U430 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ubr3Q5U430 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC31.58■■■□□ 2.65
Ubr3Q5U430 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ubr3Q5U430 Gm11599-201ENSMUST00000118720 878 ntBASIC31.56■■■□□ 2.64
Ubr3Q5U430 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Ubr3Q5U430 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Ubr3Q5U430 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC31.55■■■□□ 2.64
Ubr3Q5U430 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
Ubr3Q5U430 Gm11175-201ENSMUST00000116172 543 ntBASIC31.5■■■□□ 2.63
Ubr3Q5U430 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ubr3Q5U430 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ubr3Q5U430 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ubr3Q5U430 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC31.5■■■□□ 2.63
Ubr3Q5U430 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ubr3Q5U430 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ubr3Q5U430 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ubr3Q5U430 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ubr3Q5U430 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ubr3Q5U430 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Ubr3Q5U430 Mir6538-201ENSMUST00000183713 110 ntBASIC31.47■■■□□ 2.63
Ubr3Q5U430 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC31.47■■■□□ 2.63
Ubr3Q5U430 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Ubr3Q5U430 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Ubr3Q5U430 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Ubr3Q5U430 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Ubr3Q5U430 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Ubr3Q5U430 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Ubr3Q5U430 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Ubr3Q5U430 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Ubr3Q5U430 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC31.39■■■□□ 2.62
Ubr3Q5U430 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31.39■■■□□ 2.62
Ubr3Q5U430 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC31.39■■■□□ 2.62
Ubr3Q5U430 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Ubr3Q5U430 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Ubr3Q5U430 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31.35■■■□□ 2.61
Ubr3Q5U430 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ubr3Q5U430 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Ubr3Q5U430 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ubr3Q5U430 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Ubr3Q5U430 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ubr3Q5U430 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ubr3Q5U430 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ubr3Q5U430 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Ubr3Q5U430 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC31.31■■■□□ 2.6
Ubr3Q5U430 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ubr3Q5U430 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ubr3Q5U430 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Ubr3Q5U430 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC31.27■■■□□ 2.6
Ubr3Q5U430 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ubr3Q5U430 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
Ubr3Q5U430 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Ubr3Q5U430 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
Ubr3Q5U430 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ubr3Q5U430 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC31.24■■■□□ 2.59
Ubr3Q5U430 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Ubr3Q5U430 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Ubr3Q5U430 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC31.2■■■□□ 2.58
Ubr3Q5U430 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC31.2■■■□□ 2.58
Ubr3Q5U430 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ubr3Q5U430 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
Ubr3Q5U430 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Ubr3Q5U430 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Ubr3Q5U430 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC31.13■■■□□ 2.57
Ubr3Q5U430 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Ubr3Q5U430 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ubr3Q5U430 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC31.12■■■□□ 2.57
Ubr3Q5U430 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC31.12■■■□□ 2.57
Ubr3Q5U430 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC31.12■■■□□ 2.57
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms