Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Chmp6P0C0A3 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.71■■□□□ 1.87
Chmp6P0C0A3 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Chmp6P0C0A3 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
Chmp6P0C0A3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Chmp6P0C0A3 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Chmp6P0C0A3 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
Chmp6P0C0A3 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Chmp6P0C0A3 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Chmp6P0C0A3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Chmp6P0C0A3 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Chmp6P0C0A3 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Chmp6P0C0A3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Chmp6P0C0A3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Chmp6P0C0A3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Chmp6P0C0A3 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Chmp6P0C0A3 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Chmp6P0C0A3 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
Chmp6P0C0A3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Chmp6P0C0A3 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Chmp6P0C0A3 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Chmp6P0C0A3 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Chmp6P0C0A3 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Chmp6P0C0A3 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Chmp6P0C0A3 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Chmp6P0C0A3 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Chmp6P0C0A3 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Chmp6P0C0A3 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.61■■□□□ 1.85
Chmp6P0C0A3 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.61■■□□□ 1.85
Chmp6P0C0A3 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.6■■□□□ 1.85
Chmp6P0C0A3 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Chmp6P0C0A3 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Chmp6P0C0A3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Chmp6P0C0A3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Chmp6P0C0A3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Chmp6P0C0A3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Chmp6P0C0A3 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
Chmp6P0C0A3 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
Chmp6P0C0A3 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.56■■□□□ 1.84
Chmp6P0C0A3 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Chmp6P0C0A3 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Chmp6P0C0A3 Gm24970-201ENSMUST00000175582 82 ntBASIC26.54■■□□□ 1.84
Chmp6P0C0A3 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.54■■□□□ 1.84
Chmp6P0C0A3 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Chmp6P0C0A3 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Chmp6P0C0A3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC26.52■■□□□ 1.84
Chmp6P0C0A3 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC26.52■■□□□ 1.84
Chmp6P0C0A3 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Chmp6P0C0A3 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC26.51■■□□□ 1.83
Chmp6P0C0A3 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Chmp6P0C0A3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Chmp6P0C0A3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Chmp6P0C0A3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Chmp6P0C0A3 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Chmp6P0C0A3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Chmp6P0C0A3 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Chmp6P0C0A3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
Chmp6P0C0A3 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Chmp6P0C0A3 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
Chmp6P0C0A3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Chmp6P0C0A3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
Chmp6P0C0A3 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.45■■□□□ 1.82
Chmp6P0C0A3 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Chmp6P0C0A3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
Chmp6P0C0A3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Chmp6P0C0A3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Chmp6P0C0A3 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Chmp6P0C0A3 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
Chmp6P0C0A3 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Chmp6P0C0A3 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC26.43■■□□□ 1.82
Chmp6P0C0A3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Chmp6P0C0A3 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
Chmp6P0C0A3 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
Chmp6P0C0A3 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.41■■□□□ 1.82
Chmp6P0C0A3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Chmp6P0C0A3 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.4■■□□□ 1.82
Chmp6P0C0A3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Chmp6P0C0A3 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.39■■□□□ 1.82
Chmp6P0C0A3 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.39■■□□□ 1.82
Chmp6P0C0A3 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Chmp6P0C0A3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Chmp6P0C0A3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Chmp6P0C0A3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Chmp6P0C0A3 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Chmp6P0C0A3 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Chmp6P0C0A3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Chmp6P0C0A3 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC26.36■■□□□ 1.81
Chmp6P0C0A3 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Chmp6P0C0A3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Chmp6P0C0A3 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
Chmp6P0C0A3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Chmp6P0C0A3 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Chmp6P0C0A3 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Chmp6P0C0A3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Chmp6P0C0A3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Chmp6P0C0A3 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Chmp6P0C0A3 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Chmp6P0C0A3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Chmp6P0C0A3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Chmp6P0C0A3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.32■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms