Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC28.06■■■□□ 2.08
Pcdha4O88689 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC28.06■■■□□ 2.08
Pcdha4O88689 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Pcdha4O88689 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Pcdha4O88689 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Pcdha4O88689 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
Pcdha4O88689 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
Pcdha4O88689 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Pcdha4O88689 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.08
Pcdha4O88689 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdha4O88689 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
Pcdha4O88689 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdha4O88689 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdha4O88689 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Pcdha4O88689 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC28■■■□□ 2.07
Pcdha4O88689 Gm43863-201ENSMUST00000203822 1192 ntBASIC28■■■□□ 2.07
Pcdha4O88689 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Pcdha4O88689 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC27.99■■■□□ 2.07
Pcdha4O88689 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Pcdha4O88689 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC27.96■■■□□ 2.07
Pcdha4O88689 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Pcdha4O88689 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.93■■■□□ 2.06
Pcdha4O88689 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
Pcdha4O88689 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Pcdha4O88689 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.92■■■□□ 2.06
Pcdha4O88689 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Pcdha4O88689 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Pcdha4O88689 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Pcdha4O88689 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
Pcdha4O88689 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
Pcdha4O88689 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC27.9■■■□□ 2.06
Pcdha4O88689 Zxda-201ENSMUST00000117281 2621 ntBASIC27.89■■■□□ 2.06
Pcdha4O88689 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
Pcdha4O88689 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Pcdha4O88689 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
Pcdha4O88689 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Pcdha4O88689 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC27.86■■■□□ 2.05
Pcdha4O88689 AC157572.2-201ENSMUST00000226970 908 ntBASIC27.86■■■□□ 2.05
Pcdha4O88689 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
Pcdha4O88689 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC27.85■■■□□ 2.05
Pcdha4O88689 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.85■■■□□ 2.05
Pcdha4O88689 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
Pcdha4O88689 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC27.85■■■□□ 2.05
Pcdha4O88689 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
Pcdha4O88689 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Pcdha4O88689 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Pcdha4O88689 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27.82■■■□□ 2.04
Pcdha4O88689 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
Pcdha4O88689 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC27.81■■■□□ 2.04
Pcdha4O88689 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
Pcdha4O88689 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Pcdha4O88689 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
Pcdha4O88689 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Pcdha4O88689 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Pcdha4O88689 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC27.77■■■□□ 2.04
Pcdha4O88689 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC27.76■■■□□ 2.03
Pcdha4O88689 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC27.75■■■□□ 2.03
Pcdha4O88689 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC27.75■■■□□ 2.03
Pcdha4O88689 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Pcdha4O88689 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
Pcdha4O88689 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Pcdha4O88689 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
Pcdha4O88689 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Pcdha4O88689 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Pcdha4O88689 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Pcdha4O88689 Gm43445-201ENSMUST00000198564 2091 ntBASIC27.68■■■□□ 2.02
Pcdha4O88689 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
Pcdha4O88689 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
Pcdha4O88689 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC27.66■■■□□ 2.02
Pcdha4O88689 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Pcdha4O88689 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27.66■■■□□ 2.02
Pcdha4O88689 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Pcdha4O88689 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Pcdha4O88689 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
Pcdha4O88689 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC27.64■■■□□ 2.02
Pcdha4O88689 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Pcdha4O88689 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC27.62■■■□□ 2.01
Pcdha4O88689 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC27.62■■■□□ 2.01
Pcdha4O88689 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Pcdha4O88689 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdha4O88689 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdha4O88689 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdha4O88689 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC27.61■■■□□ 2.01
Pcdha4O88689 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdha4O88689 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Pcdha4O88689 Gm9905-201ENSMUST00000065740 1845 ntBASIC27.6■■■□□ 2.01
Pcdha4O88689 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.6■■■□□ 2.01
Pcdha4O88689 Gm6206-201ENSMUST00000133472 2199 ntBASIC27.59■■■□□ 2.01
Pcdha4O88689 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Pcdha4O88689 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
Pcdha4O88689 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Pcdha4O88689 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.58■■■□□ 2
Pcdha4O88689 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Pcdha4O88689 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Pcdha4O88689 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC27.55■■■□□ 2
Pcdha4O88689 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
Pcdha4O88689 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC27.53■■■□□ 2
Pcdha4O88689 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Pcdha4O88689 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC27.53■■■□□ 2
Pcdha4O88689 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms