Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cldn1O88551 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cldn1O88551 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cldn1O88551 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cldn1O88551 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cldn1O88551 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cldn1O88551 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.16■□□□□ 0.98
Cldn1O88551 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.16■□□□□ 0.98
Cldn1O88551 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cldn1O88551 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cldn1O88551 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cldn1O88551 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldn1O88551 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cldn1O88551 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.13■□□□□ 0.97
Cldn1O88551 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Cldn1O88551 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cldn1O88551 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cldn1O88551 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cldn1O88551 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cldn1O88551 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cldn1O88551 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cldn1O88551 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Cldn1O88551 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Cldn1O88551 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Cldn1O88551 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cldn1O88551 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.08■□□□□ 0.96
Cldn1O88551 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cldn1O88551 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cldn1O88551 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.07■□□□□ 0.96
Cldn1O88551 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cldn1O88551 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cldn1O88551 Gm11599-201ENSMUST00000118720 878 ntBASIC21.06■□□□□ 0.96
Cldn1O88551 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cldn1O88551 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.05■□□□□ 0.96
Cldn1O88551 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cldn1O88551 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
Cldn1O88551 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cldn1O88551 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cldn1O88551 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.03■□□□□ 0.96
Cldn1O88551 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Cldn1O88551 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Cldn1O88551 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cldn1O88551 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Cldn1O88551 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cldn1O88551 Gm11175-201ENSMUST00000116172 543 ntBASIC21.01■□□□□ 0.95
Cldn1O88551 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.01■□□□□ 0.95
Cldn1O88551 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cldn1O88551 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cldn1O88551 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21■□□□□ 0.95
Cldn1O88551 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cldn1O88551 Mir6538-201ENSMUST00000183713 110 ntBASIC20.99■□□□□ 0.95
Cldn1O88551 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cldn1O88551 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.99■□□□□ 0.95
Cldn1O88551 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cldn1O88551 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cldn1O88551 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.98■□□□□ 0.95
Cldn1O88551 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cldn1O88551 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cldn1O88551 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Cldn1O88551 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cldn1O88551 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cldn1O88551 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cldn1O88551 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.96■□□□□ 0.95
Cldn1O88551 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cldn1O88551 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cldn1O88551 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
Cldn1O88551 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cldn1O88551 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cldn1O88551 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cldn1O88551 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cldn1O88551 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cldn1O88551 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cldn1O88551 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cldn1O88551 Cap2-205ENSMUST00000225824 1634 ntBASIC20.89■□□□□ 0.94
Cldn1O88551 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cldn1O88551 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cldn1O88551 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cldn1O88551 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
Cldn1O88551 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.88■□□□□ 0.93
Cldn1O88551 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cldn1O88551 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cldn1O88551 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.87■□□□□ 0.93
Cldn1O88551 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cldn1O88551 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cldn1O88551 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cldn1O88551 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cldn1O88551 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cldn1O88551 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Cldn1O88551 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cldn1O88551 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cldn1O88551 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.83■□□□□ 0.93
Cldn1O88551 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cldn1O88551 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cldn1O88551 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cldn1O88551 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.82■□□□□ 0.92
Cldn1O88551 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cldn1O88551 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Cldn1O88551 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Cldn1O88551 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.81■□□□□ 0.92
Cldn1O88551 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms