Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Col7a1Q63870 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.51■■□□□ 1.19
Col7a1Q63870 Cap2-205ENSMUST00000225824 1634 ntBASIC22.5■■□□□ 1.19
Col7a1Q63870 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col7a1Q63870 Mipep-204ENSMUST00000225043 1548 ntBASIC22.49■■□□□ 1.19
Col7a1Q63870 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Col7a1Q63870 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Col7a1Q63870 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col7a1Q63870 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
Col7a1Q63870 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.46■■□□□ 1.19
Col7a1Q63870 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Col7a1Q63870 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
Col7a1Q63870 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC22.44■■□□□ 1.18
Col7a1Q63870 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Col7a1Q63870 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Col7a1Q63870 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Col7a1Q63870 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Col7a1Q63870 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Col7a1Q63870 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Col7a1Q63870 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Col7a1Q63870 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Col7a1Q63870 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Col7a1Q63870 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Col7a1Q63870 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Col7a1Q63870 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Col7a1Q63870 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC22.41■■□□□ 1.18
Col7a1Q63870 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC22.41■■□□□ 1.18
Col7a1Q63870 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Col7a1Q63870 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col7a1Q63870 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col7a1Q63870 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.36■■□□□ 1.17
Col7a1Q63870 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col7a1Q63870 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col7a1Q63870 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Col7a1Q63870 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Col7a1Q63870 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Col7a1Q63870 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Col7a1Q63870 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Col7a1Q63870 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.31■■□□□ 1.16
Col7a1Q63870 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Col7a1Q63870 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
Col7a1Q63870 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.29■■□□□ 1.16
Col7a1Q63870 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
Col7a1Q63870 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col7a1Q63870 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Col7a1Q63870 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Col7a1Q63870 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Col7a1Q63870 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Col7a1Q63870 Gm11599-201ENSMUST00000118720 878 ntBASIC22.27■■□□□ 1.16
Col7a1Q63870 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col7a1Q63870 Gm43863-201ENSMUST00000203822 1192 ntBASIC22.26■■□□□ 1.15
Col7a1Q63870 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col7a1Q63870 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col7a1Q63870 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col7a1Q63870 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col7a1Q63870 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col7a1Q63870 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col7a1Q63870 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.17■■□□□ 1.14
Col7a1Q63870 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col7a1Q63870 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col7a1Q63870 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col7a1Q63870 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Col7a1Q63870 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Col7a1Q63870 AC157572.2-201ENSMUST00000226970 908 ntBASIC22.13■■□□□ 1.13
Col7a1Q63870 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Col7a1Q63870 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Col7a1Q63870 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Col7a1Q63870 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC22.1■■□□□ 1.13
Col7a1Q63870 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Col7a1Q63870 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
Col7a1Q63870 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Col7a1Q63870 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Col7a1Q63870 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Col7a1Q63870 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Col7a1Q63870 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Col7a1Q63870 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Col7a1Q63870 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Col7a1Q63870 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
Col7a1Q63870 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC22.03■■□□□ 1.12
Col7a1Q63870 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Col7a1Q63870 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Col7a1Q63870 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
Col7a1Q63870 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Col7a1Q63870 Nkain2-201ENSMUST00000092602 558 ntBASIC22.01■■□□□ 1.11
Col7a1Q63870 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Col7a1Q63870 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Col7a1Q63870 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC22■■□□□ 1.11
Col7a1Q63870 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col7a1Q63870 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.98■■□□□ 1.11
Col7a1Q63870 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.97■■□□□ 1.11
Col7a1Q63870 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col7a1Q63870 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col7a1Q63870 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Col7a1Q63870 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Col7a1Q63870 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col7a1Q63870 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col7a1Q63870 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.88■■□□□ 1.09
Col7a1Q63870 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col7a1Q63870 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col7a1Q63870 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms