Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Ush2AQ2QI47 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ush2AQ2QI47 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ush2AQ2QI47 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ush2AQ2QI47 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Ush2AQ2QI47 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ush2AQ2QI47 Gm22567-201ENSMUST00000175542 342 ntBASIC14.58□□□□□ -0.08
Ush2AQ2QI47 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ush2AQ2QI47 CT025624.2-201ENSMUST00000223609 1909 ntBASIC14.57□□□□□ -0.08
Ush2AQ2QI47 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ush2AQ2QI47 Gm11599-201ENSMUST00000118720 878 ntBASIC14.56□□□□□ -0.08
Ush2AQ2QI47 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ush2AQ2QI47 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ush2AQ2QI47 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Ush2AQ2QI47 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC14.55□□□□□ -0.08
Ush2AQ2QI47 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Ush2AQ2QI47 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ush2AQ2QI47 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC14.54□□□□□ -0.08
Ush2AQ2QI47 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ush2AQ2QI47 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC14.52□□□□□ -0.09
Ush2AQ2QI47 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ush2AQ2QI47 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ush2AQ2QI47 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Ush2AQ2QI47 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ush2AQ2QI47 Gm43863-201ENSMUST00000203822 1192 ntBASIC14.51□□□□□ -0.09
Ush2AQ2QI47 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ush2AQ2QI47 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC14.5□□□□□ -0.09
Ush2AQ2QI47 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ush2AQ2QI47 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC14.48□□□□□ -0.09
Ush2AQ2QI47 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Ush2AQ2QI47 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ush2AQ2QI47 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ush2AQ2QI47 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ush2AQ2QI47 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ush2AQ2QI47 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ush2AQ2QI47 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ush2AQ2QI47 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ush2AQ2QI47 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ush2AQ2QI47 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC14.44□□□□□ -0.1
Ush2AQ2QI47 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ush2AQ2QI47 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ush2AQ2QI47 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ush2AQ2QI47 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ush2AQ2QI47 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ush2AQ2QI47 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ush2AQ2QI47 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC14.42□□□□□ -0.1
Ush2AQ2QI47 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ush2AQ2QI47 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC14.42□□□□□ -0.1
Ush2AQ2QI47 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ush2AQ2QI47 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ush2AQ2QI47 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC14.41□□□□□ -0.1
Ush2AQ2QI47 Nkain2-201ENSMUST00000092602 558 ntBASIC14.41□□□□□ -0.1
Ush2AQ2QI47 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Ush2AQ2QI47 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ush2AQ2QI47 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ush2AQ2QI47 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ush2AQ2QI47 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ush2AQ2QI47 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ush2AQ2QI47 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ush2AQ2QI47 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Ush2AQ2QI47 AC157572.2-201ENSMUST00000226970 908 ntBASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Zfp131-207ENSMUST00000224946 1783 ntBASIC14.36□□□□□ -0.11
Ush2AQ2QI47 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC14.35□□□□□ -0.11
Ush2AQ2QI47 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ush2AQ2QI47 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ush2AQ2QI47 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ush2AQ2QI47 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ush2AQ2QI47 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ush2AQ2QI47 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ush2AQ2QI47 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC14.34□□□□□ -0.11
Ush2AQ2QI47 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Ush2AQ2QI47 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ush2AQ2QI47 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ush2AQ2QI47 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ush2AQ2QI47 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC14.33□□□□□ -0.12
Ush2AQ2QI47 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ush2AQ2QI47 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ush2AQ2QI47 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ush2AQ2QI47 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC14.32□□□□□ -0.12
Ush2AQ2QI47 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ush2AQ2QI47 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ush2AQ2QI47 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ush2AQ2QI47 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC14.29□□□□□ -0.12
Ush2AQ2QI47 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC14.29□□□□□ -0.12
Ush2AQ2QI47 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ush2AQ2QI47 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ush2AQ2QI47 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ush2AQ2QI47 Mipep-204ENSMUST00000225043 1548 ntBASIC14.28□□□□□ -0.12
Ush2AQ2QI47 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 8.8 ms