Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF540Q8NDQ6 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 AL592293.1-201ENST00000502889 1188 ntBASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 AC129492.7-201ENST00000622992 756 ntBASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF540Q8NDQ6 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 AC026202.3-201ENST00000600805 1127 ntBASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 AC007375.3-201ENST00000600936 2314 ntBASIC20.79■□□□□ 0.92
ZNF540Q8NDQ6 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 AL024507.2-201ENST00000606070 2574 ntBASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ZNF540Q8NDQ6 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF540Q8NDQ6 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF540Q8NDQ6 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF540Q8NDQ6 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF540Q8NDQ6 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ZNF540Q8NDQ6 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.77■□□□□ 0.92
ZNF540Q8NDQ6 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
ZNF540Q8NDQ6 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 FOXO3B-201ENST00000395675 1928 ntBASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.76■□□□□ 0.91
ZNF540Q8NDQ6 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ZNF540Q8NDQ6 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 AC093536.1-201ENST00000569153 554 ntBASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
ZNF540Q8NDQ6 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 161.3 ms