Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SLC35F5-210ENST00000470204 523 ntTSL 54.81□□□□□ -1.646e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-202ENST00000536503 1374 ntTSL 1 (best)4.53□□□□□ -1.696e-6■□□□□ 8.1
LIN28BQ6ZN17 ACSM3-210ENST00000567006 520 ntTSL 24.49□□□□□ -1.696e-6■□□□□ 8.1
LIN28BQ6ZN17 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.21□□□□□ -1.736e-6■□□□□ 8.1
LIN28BQ6ZN17 SLC35F5-208ENST00000469314 628 ntTSL 34.21□□□□□ -1.746e-6■□□□□ 8.1
LIN28BQ6ZN17 ACSM3-212ENST00000567711 438 ntTSL 34.14□□□□□ -1.756e-6■□□□□ 8.1
LIN28BQ6ZN17 SLC35F5-204ENST00000420066 736 ntTSL 33.26□□□□□ -1.896e-6■□□□□ 8.1
LIN28BQ6ZN17 SLC5A6-204ENST00000412471 917 ntTSL 532.63■■■□□ 2.814e-7■□□□□ 8.1
LIN28BQ6ZN17 TMEM98-203ENST00000395149 808 ntTSL 228.09■■■□□ 2.094e-7■□□□□ 8.1
LIN28BQ6ZN17 SLC5A6-214ENST00000464538 664 ntTSL 422.72■■□□□ 1.234e-7■□□□□ 8.1
LIN28BQ6ZN17 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.14e-7■□□□□ 8.1
LIN28BQ6ZN17 TMEM98-208ENST00000583120 504 ntTSL 214.81□□□□□ -0.044e-7■□□□□ 8.1
LIN28BQ6ZN17 SLC5A6-211ENST00000445802 871 ntTSL 513.76□□□□□ -0.214e-7■□□□□ 8.1
LIN28BQ6ZN17 CLU-208ENST00000521770 520 ntTSL 28.82□□□□□ -13e-13■□□□□ 8.1
LIN28BQ6ZN17 MYL6-204ENST00000546630 544 ntTSL 1 (best)16.14■□□□□ 0.175e-14■□□□□ 8.1
LIN28BQ6ZN17 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.954e-6■□□□□ 8.1
LIN28BQ6ZN17 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.594e-6■□□□□ 8.1
LIN28BQ6ZN17 DRAM2-208ENST00000484310 1872 ntTSL 1 (best)24.85■■□□□ 1.574e-6■□□□□ 8.1
LIN28BQ6ZN17 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.854e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-216ENST00000495070 571 ntTSL 419.02■□□□□ 0.644e-6■□□□□ 8.1
LIN28BQ6ZN17 ANAPC5-211ENST00000536837 509 ntTSL 418.41■□□□□ 0.544e-6■□□□□ 8.1
LIN28BQ6ZN17 PSMC4-204ENST00000596386 929 ntTSL 218.04■□□□□ 0.484e-6■□□□□ 8.1
LIN28BQ6ZN17 ANAPC5-210ENST00000536416 677 ntTSL 317.74■□□□□ 0.434e-6■□□□□ 8.1
LIN28BQ6ZN17 PSMC4-203ENST00000593455 1532 ntTSL 516.32■□□□□ 0.24e-6■□□□□ 8.1
LIN28BQ6ZN17 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.164e-6■□□□□ 8.1
LIN28BQ6ZN17 ANAPC5-222ENST00000545801 1281 ntTSL 215.96■□□□□ 0.154e-6■□□□□ 8.1
LIN28BQ6ZN17 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.93■□□□□ 0.144e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-213ENST00000476273 668 ntTSL 315.9■□□□□ 0.144e-6■□□□□ 8.1
LIN28BQ6ZN17 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.42■□□□□ 0.064e-6■□□□□ 8.1
LIN28BQ6ZN17 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.054e-6■□□□□ 8.1
LIN28BQ6ZN17 ANAPC5-216ENST00000539871 704 ntTSL 514.43□□□□□ -0.14e-6■□□□□ 8.1
LIN28BQ6ZN17 PSMC4-206ENST00000601697 1623 ntTSL 214.04□□□□□ -0.164e-6■□□□□ 8.1
LIN28BQ6ZN17 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.214e-6■□□□□ 8.1
LIN28BQ6ZN17 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.45□□□□□ -0.264e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.284e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-211ENST00000471589 892 ntTSL 512.64□□□□□ -0.394e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-203ENST00000361247 4149 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.424e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-207ENST00000465079 693 ntTSL 212.08□□□□□ -0.484e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC11.94□□□□□ -0.54e-6■□□□□ 8.1
LIN28BQ6ZN17 ARGLU1-204ENST00000472226 1336 ntTSL 26.92□□□□□ -1.34e-6■□□□□ 8.1
LIN28BQ6ZN17 ARHGEF2-214ENST00000477754 883 ntTSL 56.11□□□□□ -1.434e-6■□□□□ 8.1
LIN28BQ6ZN17 DRAM2-202ENST00000461449 611 ntTSL 35.47□□□□□ -1.534e-6■□□□□ 8.1
LIN28BQ6ZN17 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.323e-7■□□□□ 8.1
LIN28BQ6ZN17 HDAC3-204ENST00000469207 829 ntTSL 314.27□□□□□ -0.133e-7■□□□□ 8.1
LIN28BQ6ZN17 HERC1-205ENST00000559886 2462 ntTSL 1 (best)13.04□□□□□ -0.323e-7■□□□□ 8.1
LIN28BQ6ZN17 HERC1-214ENST00000561400 2215 ntTSL 212.62□□□□□ -0.393e-7■□□□□ 8.1
LIN28BQ6ZN17 HDAC3-205ENST00000469550 1952 ntTSL 1 (best)9.92□□□□□ -0.823e-7■□□□□ 8.1
LIN28BQ6ZN17 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29■■■□□ 2.233e-8■□□□□ 8.1
LIN28BQ6ZN17 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.033e-8■□□□□ 8.1
LIN28BQ6ZN17 FARP1-229ENST00000600190 566 ntTSL 321.77■■□□□ 1.083e-8■□□□□ 8.1
LIN28BQ6ZN17 SLC35D2-205ENST00000490599 715 ntTSL 219.37■□□□□ 0.693e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-206ENST00000467340 588 ntTSL 28.93□□□□□ -0.983e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-205ENST00000433418 3281 ntTSL 5 BASIC8.88□□□□□ -0.993e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.313e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.49□□□□□ -1.373e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-208ENST00000495539 716 ntTSL 25.69□□□□□ -1.53e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.513e-8■□□□□ 8.1
LIN28BQ6ZN17 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.533e-8■□□□□ 8.1
LIN28BQ6ZN17 CLU-203ENST00000518050 718 ntTSL 223.31■■□□□ 1.322e-9■□□□□ 8.1
LIN28BQ6ZN17 CLU-204ENST00000519472 303 ntTSL 220.97■□□□□ 0.952e-9■□□□□ 8.1
LIN28BQ6ZN17 CLU-214ENST00000523396 426 ntTSL 320.97■□□□□ 0.952e-9■□□□□ 8.1
LIN28BQ6ZN17 CLU-210ENST00000522238 791 ntTSL 312.71□□□□□ -0.372e-9■□□□□ 8.1
LIN28BQ6ZN17 SLC4A2-217ENST00000493040 556 ntTSL 418.68■□□□□ 0.582e-7■□□□□ 8.1
LIN28BQ6ZN17 SLC4A2-203ENST00000460010 551 ntTSL 417.83■□□□□ 0.442e-7■□□□□ 8.1
LIN28BQ6ZN17 SLC4A2-211ENST00000482697 383 ntTSL 317.83■□□□□ 0.442e-7■□□□□ 8.1
LIN28BQ6ZN17 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.062e-11■□□□□ 8
LIN28BQ6ZN17 ATF5-203ENST00000596658 722 ntTSL 220.19■□□□□ 0.822e-11■□□□□ 8
LIN28BQ6ZN17 ATF5-204ENST00000597227 828 ntTSL 318.96■□□□□ 0.632e-11■□□□□ 8
LIN28BQ6ZN17 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.521e-10■□□□□ 8
LIN28BQ6ZN17 FKBP10-206ENST00000489591 2826 ntTSL 216.93■□□□□ 0.31e-10■□□□□ 8
LIN28BQ6ZN17 FKBP10-208ENST00000585664 598 ntTSL 315.6■□□□□ 0.091e-10■□□□□ 8
LIN28BQ6ZN17 FTH1-209ENST00000533138 885 ntTSL 512.94□□□□□ -0.342e-27■□□□□ 8
Retrieved 72 of 21,972 protein–RNA pairs in 434.4 ms