Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HLA-DMBP28068 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DMBP28068 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DMBP28068 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DMBP28068 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HLA-DMBP28068 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DMBP28068 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HLA-DMBP28068 AC007029.1-201ENST00000604183 313 ntBASIC17.8■□□□□ 0.44
HLA-DMBP28068 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DMBP28068 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DMBP28068 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HLA-DMBP28068 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DMBP28068 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DMBP28068 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DMBP28068 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HLA-DMBP28068 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC17.79■□□□□ 0.44
HLA-DMBP28068 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DMBP28068 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DMBP28068 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HLA-DMBP28068 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC17.78■□□□□ 0.44
HLA-DMBP28068 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HLA-DMBP28068 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.78■□□□□ 0.44
HLA-DMBP28068 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC17.78■□□□□ 0.44
HLA-DMBP28068 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HLA-DMBP28068 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HLA-DMBP28068 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 LINC00543-201ENST00000567234 1845 ntBASIC17.77■□□□□ 0.44
HLA-DMBP28068 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HLA-DMBP28068 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DMBP28068 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.77■□□□□ 0.43
HLA-DMBP28068 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HLA-DMBP28068 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC17.76■□□□□ 0.43
HLA-DMBP28068 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DMBP28068 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC17.76■□□□□ 0.43
HLA-DMBP28068 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DMBP28068 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DMBP28068 NTF6A-201ENST00000591175 560 ntBASIC17.75■□□□□ 0.43
HLA-DMBP28068 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DMBP28068 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DMBP28068 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DMBP28068 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HLA-DMBP28068 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.75■□□□□ 0.43
HLA-DMBP28068 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DMBP28068 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DMBP28068 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HLA-DMBP28068 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DMBP28068 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DMBP28068 AC026202.3-201ENST00000600805 1127 ntBASIC17.74■□□□□ 0.43
HLA-DMBP28068 RAP2CP1-202ENST00000605179 643 ntBASIC17.74■□□□□ 0.43
HLA-DMBP28068 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DMBP28068 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.74■□□□□ 0.43
HLA-DMBP28068 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DMBP28068 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC17.73■□□□□ 0.43
HLA-DMBP28068 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DMBP28068 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HLA-DMBP28068 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HLA-DMBP28068 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HLA-DMBP28068 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DMBP28068 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DMBP28068 HYI-213ENST00000583037 1322 ntTSL 5 BASIC17.72■□□□□ 0.43
HLA-DMBP28068 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DMBP28068 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
HLA-DMBP28068 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DMBP28068 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC17.72■□□□□ 0.43
HLA-DMBP28068 MIR6089-201ENST00000616698 64 ntBASIC17.72■□□□□ 0.43
HLA-DMBP28068 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DMBP28068 LTK-203ENST00000453182 2412 ntTSL 2 BASIC17.72■□□□□ 0.43
HLA-DMBP28068 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DMBP28068 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DMBP28068 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HLA-DMBP28068 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC17.71■□□□□ 0.43
HLA-DMBP28068 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC17.71■□□□□ 0.43
HLA-DMBP28068 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HLA-DMBP28068 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC17.71■□□□□ 0.43
HLA-DMBP28068 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC17.71■□□□□ 0.43
HLA-DMBP28068 AC004812.2-201ENST00000611079 2094 ntBASIC17.71■□□□□ 0.43
HLA-DMBP28068 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HLA-DMBP28068 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.71■□□□□ 0.43
HLA-DMBP28068 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms