Protein–RNA interactions for Protein: A0A0B7P3V8

TY4B-P, Transposon Ty4-P Gag-Pol polyprotein, yeast

Predictions only

Length 1,104 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
TY4B-P	A0A0B7P3V8	PTP1	YDL230W	1008 nt		11.93	□□□□□ -0.5
TY4B-P	A0A0B7P3V8	YMR090W	YMR090W	684 nt		11.93	□□□□□ -0.5
TY4B-P	A0A0B7P3V8	MNP1	YGL068W	585 nt		11.91	□□□□□ -0.5
TY4B-P	A0A0B7P3V8	SIS1	YNL007C	1059 nt		11.9	□□□□□ -0.5
TY4B-P	A0A0B7P3V8	YGR139W	YGR139W	339 nt		11.88	□□□□□ -0.51
TY4B-P	A0A0B7P3V8	CAC2	YML102W	1407 nt		11.87	□□□□□ -0.51
TY4B-P	A0A0B7P3V8	YDL221W	YDL221W	552 nt		11.85	□□□□□ -0.51
TY4B-P	A0A0B7P3V8	RKM5	YLR137W	1104 nt		11.85	□□□□□ -0.51
TY4B-P	A0A0B7P3V8	YBR220C	YBR220C	1683 nt		11.81	□□□□□ -0.52
TY4B-P	A0A0B7P3V8	SDH1	YKL148C	1923 nt		11.75	□□□□□ -0.53
TY4B-P	A0A0B7P3V8	ART5	YGR068C	1761 nt		11.73	□□□□□ -0.53
TY4B-P	A0A0B7P3V8	IRC15	YPL017C	1500 nt		11.7	□□□□□ -0.54
TY4B-P	A0A0B7P3V8	GFD2	YCL036W	1701 nt		11.7	□□□□□ -0.54
TY4B-P	A0A0B7P3V8	NPL3	YDR432W	1245 nt		11.69	□□□□□ -0.54
TY4B-P	A0A0B7P3V8	PET9	YBL030C	957 nt		11.67	□□□□□ -0.54
TY4B-P	A0A0B7P3V8	SCC4	YER147C	1875 nt		11.66	□□□□□ -0.54
TY4B-P	A0A0B7P3V8	YOL037C	YOL037C	354 nt		11.65	□□□□□ -0.54
TY4B-P	A0A0B7P3V8	YCH1	YGR203W	447 nt		11.64	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	YOR139C	YOR139C	393 nt		11.64	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	GIS3	YLR094C	1509 nt		11.63	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	MCH5	YOR306C	1566 nt		11.62	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	TIR4	YOR009W	1464 nt		11.61	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	BOR1	YNL275W	1731 nt		11.6	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	RTS2	YOR077W	699 nt		11.6	□□□□□ -0.55
TY4B-P	A0A0B7P3V8	GUT2	YIL155C	1950 nt		11.55	□□□□□ -0.56
TY4B-P	A0A0B7P3V8	YLR154C-G	YLR154C-G	150 nt		11.53	□□□□□ -0.56
TY4B-P	A0A0B7P3V8	YMR057C	YMR057C	372 nt		11.52	□□□□□ -0.57
TY4B-P	A0A0B7P3V8	NME1	NME1	340 nt		11.52	□□□□□ -0.57
TY4B-P	A0A0B7P3V8	YJL152W	YJL152W	360 nt		11.5	□□□□□ -0.57
TY4B-P	A0A0B7P3V8	CUE1	YMR264W	612 nt		11.5	□□□□□ -0.57
TY4B-P	A0A0B7P3V8	SEC11	YIR022W	504 nt		11.45	□□□□□ -0.58
TY4B-P	A0A0B7P3V8	PCH2	YBR186W	1695 nt		11.43	□□□□□ -0.58
TY4B-P	A0A0B7P3V8	FRE6	YLL051C	2139 nt		11.42	□□□□□ -0.58
TY4B-P	A0A0B7P3V8	YSC84	YHR016C	1407 nt		11.39	□□□□□ -0.59
TY4B-P	A0A0B7P3V8	YIL100W	YIL100W	354 nt		11.39	□□□□□ -0.59
TY4B-P	A0A0B7P3V8	WHI5	YOR083W	888 nt		11.39	□□□□□ -0.59
TY4B-P	A0A0B7P3V8	YLR281C	YLR281C	468 nt		11.37	□□□□□ -0.59
TY4B-P	A0A0B7P3V8	YCL048W-A	YCL048W-A	240 nt		11.37	□□□□□ -0.59
TY4B-P	A0A0B7P3V8	YLR236C	YLR236C	324 nt		11.36	□□□□□ -0.59
TY4B-P	A0A0B7P3V8	YNL195C	YNL195C	786 nt		11.33	□□□□□ -0.6
TY4B-P	A0A0B7P3V8	YHL050C	YHL050C	2094 nt		11.31	□□□□□ -0.6
TY4B-P	A0A0B7P3V8	RRT12	YCR045C	1476 nt		11.29	□□□□□ -0.6
TY4B-P	A0A0B7P3V8	tM(CAU)C	tM(CAU)C	72 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	IMT4	tM(CAU)E	72 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	IMT3	tM(CAU)J3	72 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	IMT1	tM(CAU)O1	72 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	IMT2	tM(CAU)P	72 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	IDH1	YNL037C	1083 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	YJL225C	YJL225C	5277 nt		11.23	□□□□□ -0.61
TY4B-P	A0A0B7P3V8	PUS2	YGL063W	1113 nt		11.18	□□□□□ -0.62
TY4B-P	A0A0B7P3V8	IMP2'	YIL154C	1041 nt		11.17	□□□□□ -0.62
TY4B-P	A0A0B7P3V8	PIB2	YGL023C	1908 nt		11.17	□□□□□ -0.62
TY4B-P	A0A0B7P3V8	GBP2	YCL011C	1284 nt		11.16	□□□□□ -0.62
TY4B-P	A0A0B7P3V8	ALG12	YNR030W	1656 nt		11.16	□□□□□ -0.62
TY4B-P	A0A0B7P3V8	DSK2	YMR276W	1122 nt		11.13	□□□□□ -0.63
TY4B-P	A0A0B7P3V8	RTF1	YGL244W	1677 nt		11.12	□□□□□ -0.63
TY4B-P	A0A0B7P3V8	RRD1	YIL153W	1182 nt		11.1	□□□□□ -0.63
TY4B-P	A0A0B7P3V8	BOP3	YNL042W	1191 nt		11.09	□□□□□ -0.63
TY4B-P	A0A0B7P3V8	TCD2	YKL027W	1344 nt		11.08	□□□□□ -0.64
TY4B-P	A0A0B7P3V8	FMP52	YER004W	696 nt		11.03	□□□□□ -0.64
TY4B-P	A0A0B7P3V8	DED1	YOR204W	1815 nt		11.02	□□□□□ -0.64
TY4B-P	A0A0B7P3V8	YDR433W	YDR433W	441 nt		11.02	□□□□□ -0.65
TY4B-P	A0A0B7P3V8	YPR011C	YPR011C	981 nt		11	□□□□□ -0.65
TY4B-P	A0A0B7P3V8	NCP1	YHR042W	2076 nt		10.97	□□□□□ -0.65
TY4B-P	A0A0B7P3V8	SSN3	YPL042C	1668 nt		10.96	□□□□□ -0.65
TY4B-P	A0A0B7P3V8	FMP45	YDL222C	930 nt		10.96	□□□□□ -0.65
TY4B-P	A0A0B7P3V8	FMT1	YBL013W	1206 nt		10.94	□□□□□ -0.66
TY4B-P	A0A0B7P3V8	MXR2	YCL033C	507 nt		10.94	□□□□□ -0.66
TY4B-P	A0A0B7P3V8	PTK1	YKL198C	1989 nt		10.94	□□□□□ -0.66
TY4B-P	A0A0B7P3V8	PCM1	YEL058W	1674 nt		10.93	□□□□□ -0.66
TY4B-P	A0A0B7P3V8	LCB1	YMR296C	1677 nt		10.93	□□□□□ -0.66
TY4B-P	A0A0B7P3V8	ERV46	YAL042W	1248 nt		10.92	□□□□□ -0.66
TY4B-P	A0A0B7P3V8	CWP1	YKL096W	720 nt		10.89	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	LPX1	YOR084W	1164 nt		10.89	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	CSM2	YIL132C	642 nt		10.87	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	YKR040C	YKR040C	504 nt		10.87	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	ADH2	YMR303C	1047 nt		10.87	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	SIM1	YIL123W	1431 nt		10.86	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	SNF6	YHL025W	999 nt		10.86	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	YCL042W	YCL042W	360 nt		10.86	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	BSP1	YPR171W	1731 nt		10.85	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	SOR2	YDL246C	1074 nt		10.85	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	SOR1	YJR159W	1074 nt		10.85	□□□□□ -0.67
TY4B-P	A0A0B7P3V8	NAR1	YNL240C	1476 nt		10.8	□□□□□ -0.68
TY4B-P	A0A0B7P3V8	HSL7	YBR133C	2484 nt		10.79	□□□□□ -0.68
TY4B-P	A0A0B7P3V8	HSP60	YLR259C	1719 nt		10.79	□□□□□ -0.68
TY4B-P	A0A0B7P3V8	BIO4	YNR057C	714 nt		10.78	□□□□□ -0.68
TY4B-P	A0A0B7P3V8	FRD1	YEL047C	1413 nt		10.77	□□□□□ -0.68
TY4B-P	A0A0B7P3V8	YFL054C	YFL054C	1941 nt		10.76	□□□□□ -0.69
TY4B-P	A0A0B7P3V8	RDN37-1	RDN37-1	5354 nt		10.76	□□□□□ -0.69
TY4B-P	A0A0B7P3V8	RDN37-2	RDN37-2	5354 nt		10.76	□□□□□ -0.69
TY4B-P	A0A0B7P3V8	HEL2	YDR266C	1920 nt		10.72	□□□□□ -0.69
TY4B-P	A0A0B7P3V8	YIH1	YCR059C	777 nt		10.71	□□□□□ -0.69
TY4B-P	A0A0B7P3V8	LYS4	YDR234W	2082 nt		10.7	□□□□□ -0.7
TY4B-P	A0A0B7P3V8	CMP2	YML057W	1815 nt		10.7	□□□□□ -0.7
TY4B-P	A0A0B7P3V8	RNQ1	YCL028W	1218 nt		10.68	□□□□□ -0.7
TY4B-P	A0A0B7P3V8	SPT8	YLR055C	1809 nt		10.68	□□□□□ -0.7
TY4B-P	A0A0B7P3V8	ERF2	YLR246W	1080 nt		10.66	□□□□□ -0.7
TY4B-P	A0A0B7P3V8	MET2	YNL277W	1461 nt		10.66	□□□□□ -0.7
TY4B-P	A0A0B7P3V8	YLL053C	YLL053C	459 nt		10.64	□□□□□ -0.71

Retrieved 100 of 7,029 protein–RNA pairs in 55.7 ms