Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Rnf220Q6PDX6 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.85■□□□□ 0.93
Rnf220Q6PDX6 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf220Q6PDX6 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf220Q6PDX6 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.85■□□□□ 0.93
Rnf220Q6PDX6 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf220Q6PDX6 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf220Q6PDX6 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf220Q6PDX6 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf220Q6PDX6 Gm45855-201ENSMUST00000212546 880 ntBASIC20.84■□□□□ 0.93
Rnf220Q6PDX6 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf220Q6PDX6 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rnf220Q6PDX6 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Rnf220Q6PDX6 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rnf220Q6PDX6 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf220Q6PDX6 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf220Q6PDX6 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf220Q6PDX6 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Rnf220Q6PDX6 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.82■□□□□ 0.92
Rnf220Q6PDX6 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Rnf220Q6PDX6 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf220Q6PDX6 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Rnf220Q6PDX6 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rnf220Q6PDX6 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rnf220Q6PDX6 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Rnf220Q6PDX6 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rnf220Q6PDX6 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
Rnf220Q6PDX6 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf220Q6PDX6 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf220Q6PDX6 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rnf220Q6PDX6 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf220Q6PDX6 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf220Q6PDX6 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.78■□□□□ 0.92
Rnf220Q6PDX6 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf220Q6PDX6 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf220Q6PDX6 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.77■□□□□ 0.92
Rnf220Q6PDX6 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf220Q6PDX6 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC20.77■□□□□ 0.92
Rnf220Q6PDX6 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf220Q6PDX6 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf220Q6PDX6 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Rnf220Q6PDX6 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf220Q6PDX6 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf220Q6PDX6 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf220Q6PDX6 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf220Q6PDX6 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf220Q6PDX6 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf220Q6PDX6 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf220Q6PDX6 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.74■□□□□ 0.91
Rnf220Q6PDX6 Gm30023-201ENSMUST00000197970 889 ntBASIC20.74■□□□□ 0.91
Rnf220Q6PDX6 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf220Q6PDX6 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf220Q6PDX6 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf220Q6PDX6 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Rnf220Q6PDX6 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Rnf220Q6PDX6 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Rnf220Q6PDX6 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
Rnf220Q6PDX6 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Rnf220Q6PDX6 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Rnf220Q6PDX6 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf220Q6PDX6 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC20.7■□□□□ 0.9
Rnf220Q6PDX6 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf220Q6PDX6 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf220Q6PDX6 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf220Q6PDX6 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf220Q6PDX6 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf220Q6PDX6 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf220Q6PDX6 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Rnf220Q6PDX6 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf220Q6PDX6 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Rnf220Q6PDX6 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf220Q6PDX6 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf220Q6PDX6 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf220Q6PDX6 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms