Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Rnf220Q6PDX6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Rnf220Q6PDX6 Gm25239-201ENSMUST00000174915 86 ntBASIC31.47■■■□□ 2.63
Rnf220Q6PDX6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Rnf220Q6PDX6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
Rnf220Q6PDX6 Psd-208ENSMUST00000224556 2034 ntBASIC30.31■■■□□ 2.44
Rnf220Q6PDX6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Rnf220Q6PDX6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Rnf220Q6PDX6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Rnf220Q6PDX6 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.89■■■□□ 2.22
Rnf220Q6PDX6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Rnf220Q6PDX6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Rnf220Q6PDX6 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Rnf220Q6PDX6 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Rnf220Q6PDX6 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Rnf220Q6PDX6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
Rnf220Q6PDX6 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Rnf220Q6PDX6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Rnf220Q6PDX6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Rnf220Q6PDX6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Rnf220Q6PDX6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Rnf220Q6PDX6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Rnf220Q6PDX6 Gm15042-201ENSMUST00000120212 883 ntBASIC28.19■■■□□ 2.1
Rnf220Q6PDX6 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Rnf220Q6PDX6 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Rnf220Q6PDX6 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.98■■■□□ 2.07
Rnf220Q6PDX6 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Rnf220Q6PDX6 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.7■■■□□ 2.02
Rnf220Q6PDX6 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Rnf220Q6PDX6 Gm15045-201ENSMUST00000117359 883 ntBASIC27.67■■■□□ 2.02
Rnf220Q6PDX6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Rnf220Q6PDX6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.5■■□□□ 1.99
Rnf220Q6PDX6 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.46■■□□□ 1.99
Rnf220Q6PDX6 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
Rnf220Q6PDX6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
Rnf220Q6PDX6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Rnf220Q6PDX6 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
Rnf220Q6PDX6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.13■■□□□ 1.93
Rnf220Q6PDX6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
Rnf220Q6PDX6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Rnf220Q6PDX6 Gm24109-201ENSMUST00000175489 103 ntBASIC26.99■■□□□ 1.91
Rnf220Q6PDX6 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
Rnf220Q6PDX6 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Rnf220Q6PDX6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Rnf220Q6PDX6 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Rnf220Q6PDX6 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Rnf220Q6PDX6 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Rnf220Q6PDX6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Rnf220Q6PDX6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Rnf220Q6PDX6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Rnf220Q6PDX6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26.77■■□□□ 1.88
Rnf220Q6PDX6 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
Rnf220Q6PDX6 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Rnf220Q6PDX6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
Rnf220Q6PDX6 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.71■■□□□ 1.87
Rnf220Q6PDX6 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.86
Rnf220Q6PDX6 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.69■■□□□ 1.86
Rnf220Q6PDX6 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Rnf220Q6PDX6 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Rnf220Q6PDX6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.54■■□□□ 1.84
Rnf220Q6PDX6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Rnf220Q6PDX6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Rnf220Q6PDX6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Rnf220Q6PDX6 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Rnf220Q6PDX6 Gm23366-201ENSMUST00000175022 89 ntBASIC26.4■■□□□ 1.82
Rnf220Q6PDX6 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.36■■□□□ 1.81
Rnf220Q6PDX6 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Rnf220Q6PDX6 Zxda-201ENSMUST00000117281 2621 ntBASIC26.29■■□□□ 1.8
Rnf220Q6PDX6 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Rnf220Q6PDX6 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.28■■□□□ 1.8
Rnf220Q6PDX6 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Rnf220Q6PDX6 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Rnf220Q6PDX6 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Rnf220Q6PDX6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Rnf220Q6PDX6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Rnf220Q6PDX6 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Rnf220Q6PDX6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Rnf220Q6PDX6 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
Rnf220Q6PDX6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Rnf220Q6PDX6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Rnf220Q6PDX6 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
Rnf220Q6PDX6 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
Rnf220Q6PDX6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.11■■□□□ 1.77
Rnf220Q6PDX6 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Rnf220Q6PDX6 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Rnf220Q6PDX6 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
Rnf220Q6PDX6 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Rnf220Q6PDX6 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Rnf220Q6PDX6 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Rnf220Q6PDX6 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Rnf220Q6PDX6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
Rnf220Q6PDX6 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Rnf220Q6PDX6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Rnf220Q6PDX6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25.82■■□□□ 1.72
Rnf220Q6PDX6 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Rnf220Q6PDX6 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC25.79■■□□□ 1.72
Rnf220Q6PDX6 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Rnf220Q6PDX6 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Rnf220Q6PDX6 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Rnf220Q6PDX6 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms