Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SMC1BQ8NDV3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.34■■■□□ 2.45
SMC1BQ8NDV3 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SMC1BQ8NDV3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SMC1BQ8NDV3 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
SMC1BQ8NDV3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SMC1BQ8NDV3 AC120057.4-201ENST00000624722 1615 ntBASIC30.33■■■□□ 2.45
SMC1BQ8NDV3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.33■■■□□ 2.45
SMC1BQ8NDV3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SMC1BQ8NDV3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SMC1BQ8NDV3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SMC1BQ8NDV3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SMC1BQ8NDV3 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SMC1BQ8NDV3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SMC1BQ8NDV3 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
SMC1BQ8NDV3 AC239859.2-201ENST00000444165 318 ntBASIC30.31■■■□□ 2.44
SMC1BQ8NDV3 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
SMC1BQ8NDV3 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.3■■■□□ 2.44
SMC1BQ8NDV3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SMC1BQ8NDV3 RAP2CP1-202ENST00000605179 643 ntBASIC30.29■■■□□ 2.44
SMC1BQ8NDV3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.28■■■□□ 2.44
SMC1BQ8NDV3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMC1BQ8NDV3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.28■■■□□ 2.44
SMC1BQ8NDV3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.28■■■□□ 2.44
SMC1BQ8NDV3 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.28■■■□□ 2.44
SMC1BQ8NDV3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
SMC1BQ8NDV3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC30.27■■■□□ 2.44
SMC1BQ8NDV3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SMC1BQ8NDV3 AC093536.1-201ENST00000569153 554 ntBASIC30.26■■■□□ 2.43
SMC1BQ8NDV3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.26■■■□□ 2.43
SMC1BQ8NDV3 AL161658.1-201ENST00000623641 1967 ntBASIC30.24■■■□□ 2.43
SMC1BQ8NDV3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMC1BQ8NDV3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.24■■■□□ 2.43
SMC1BQ8NDV3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMC1BQ8NDV3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.24■■■□□ 2.43
SMC1BQ8NDV3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMC1BQ8NDV3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.23■■■□□ 2.43
SMC1BQ8NDV3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.22■■■□□ 2.43
SMC1BQ8NDV3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.22■■■□□ 2.43
SMC1BQ8NDV3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
SMC1BQ8NDV3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SMC1BQ8NDV3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC30.21■■■□□ 2.43
SMC1BQ8NDV3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.21■■■□□ 2.43
SMC1BQ8NDV3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.21■■■□□ 2.43
SMC1BQ8NDV3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SMC1BQ8NDV3 AC018755.3-202ENST00000596210 929 ntBASIC30.21■■■□□ 2.43
SMC1BQ8NDV3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.2■■■□□ 2.43
SMC1BQ8NDV3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
SMC1BQ8NDV3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.2■■■□□ 2.43
SMC1BQ8NDV3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
SMC1BQ8NDV3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 Z92544.1-202ENST00000571933 1220 ntBASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 AL139246.5-201ENST00000606645 996 ntBASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.19■■■□□ 2.42
SMC1BQ8NDV3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMC1BQ8NDV3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
SMC1BQ8NDV3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC30.18■■■□□ 2.42
SMC1BQ8NDV3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.18■■■□□ 2.42
SMC1BQ8NDV3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMC1BQ8NDV3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMC1BQ8NDV3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.17■■■□□ 2.42
SMC1BQ8NDV3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMC1BQ8NDV3 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.17■■■□□ 2.42
SMC1BQ8NDV3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMC1BQ8NDV3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SMC1BQ8NDV3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SMC1BQ8NDV3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SMC1BQ8NDV3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMC1BQ8NDV3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SMC1BQ8NDV3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
SMC1BQ8NDV3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
SMC1BQ8NDV3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
SMC1BQ8NDV3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SMC1BQ8NDV3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.12■■■□□ 2.41
SMC1BQ8NDV3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SMC1BQ8NDV3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.12■■■□□ 2.41
SMC1BQ8NDV3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC1BQ8NDV3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
SMC1BQ8NDV3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.1■■■□□ 2.41
SMC1BQ8NDV3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.1■■■□□ 2.41
SMC1BQ8NDV3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
SMC1BQ8NDV3 AL359258.2-201ENST00000564063 1566 ntBASIC30.1■■■□□ 2.41
SMC1BQ8NDV3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.09■■■□□ 2.41
SMC1BQ8NDV3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.09■■■□□ 2.41
SMC1BQ8NDV3 AC092666.2-201ENST00000613287 246 ntBASIC30.09■■■□□ 2.41
SMC1BQ8NDV3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC1BQ8NDV3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.08■■■□□ 2.41
SMC1BQ8NDV3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC1BQ8NDV3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.07■■■□□ 2.4
SMC1BQ8NDV3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.07■■■□□ 2.4
SMC1BQ8NDV3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMC1BQ8NDV3 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms