RNA–Protein interactions for RNA: ENST00000612899.4

TNFAIP3-206, Transcript of TNF alpha induced protein 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TNFAIP3, Length 4,735 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-206ENST00000612899 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.49□□□□□ -0.097e-6■■■■■ 74.5
TNFAIP3-206ENST00000612899 CSTF2P33240 577 aaKnown RBP eCLIP12.11□□□□□ -0.472e-11■■■■■ 54.3
TNFAIP3-206ENST00000612899 RBM22Q9NW64 420 aaKnown RBP eCLIP12.9□□□□□ -0.352e-9■■■■■ 44.3
TNFAIP3-206ENST00000612899 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.8□□□□□ -0.522e-9■■■■■ 37.4
TNFAIP3-206ENST00000612899 GPKOWQ92917 476 aaPredicted RBP eCLIP13.94□□□□□ -0.182e-6■■■■■ 37.1
TNFAIP3-206ENST00000612899 EIF4G2P78344 907 aaKnown RBP eCLIP16.88■□□□□ 0.293e-7■■■■■ 30.4
TNFAIP3-206ENST00000612899 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.72□□□□□ -0.693e-7■■■■■ 28.2
TNFAIP3-206ENST00000612899 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.1□□□□□ -0.473e-7■■■■□ 25.7
TNFAIP3-206ENST00000612899 U2AF2P26368 475 aaKnown RBP eCLIP13.98□□□□□ -0.172e-16■■■■□ 24.9
TNFAIP3-206ENST00000612899 PPIGQ13427 754 aaKnown RBP eCLIP12.33□□□□□ -0.445e-8■■■■□ 23.6
TNFAIP3-206ENST00000612899 AQRO60306 1485 aaKnown RBP eCLIP15.74■□□□□ 0.111e-6■■■■□ 23.4
TNFAIP3-206ENST00000612899 U2AF1Q01081 240 aaKnown RBP eCLIP16.06■□□□□ 0.167e-7■■■■□ 23.3
TNFAIP3-206ENST00000612899 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.45□□□□□ -0.423e-6■■■■□ 21.9
TNFAIP3-206ENST00000612899 PRPF4O43172 522 aaKnown RBP eCLIP12.93□□□□□ -0.346e-7■■■■□ 21.5
TNFAIP3-206ENST00000612899 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.4□□□□□ -0.268e-12■■■■□ 20.4
TNFAIP3-206ENST00000612899 RBM15Q96T37 977 aaKnown RBP eCLIP13.2□□□□□ -0.31e-6■■■■□ 19.4
TNFAIP3-206ENST00000612899 EIF3HO15372 352 aaKnown RBP eCLIP13.11□□□□□ -0.312e-7■■■□□ 18.4
TNFAIP3-206ENST00000612899 DDX6P26196 483 aaKnown RBP eCLIP12.17□□□□□ -0.462e-8■■■□□ 17.7
TNFAIP3-206ENST00000612899 RBFOX2O43251 390 aaKnown RBP eCLIP10.41□□□□□ -0.746e-7■■■□□ 16.3
TNFAIP3-206ENST00000612899 DKC1O60832 514 aaKnown RBP eCLIP13.87□□□□□ -0.192e-6■■■□□ 16.1
TNFAIP3-206ENST00000612899 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.02□□□□□ -0.179e-7■■■□□ 15.3
TNFAIP3-206ENST00000612899 NCBP2P52298 156 aaKnown RBP eCLIP12.2□□□□□ -0.467e-14■■□□□ 14.3
TNFAIP3-206ENST00000612899 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.35□□□□□ -0.277e-7■■□□□ 14.1
TNFAIP3-206ENST00000612899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.1■□□□□ 0.339e-8■■□□□ 12.2
TNFAIP3-206ENST00000612899 EFTUD2Q15029 972 aaKnown RBP eCLIP13.08□□□□□ -0.323e-6■■□□□ 11.8
TNFAIP3-206ENST00000612899 FXR2P51116 673 aaKnown RBP eCLIP13.28□□□□□ -0.283e-6■□□□□ 10.5
TNFAIP3-206ENST00000612899 HLTFQ14527 1009 aaKnown RBP eCLIP14.25□□□□□ -0.139e-6■□□□□ 9.4
Retrieved 27 of 27 RNA–protein pairs in 7.7 ms