RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 PEX1O43933 1283 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 TBX10O75333 385 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 BPIP17213 487 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 OR4D1Q15615 310 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 SPPL2CQ8IUH8 684 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 HDDC3Q8N4P3 179 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 OR4F6Q8NGB9 312 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 RHEBL1Q8TAI7 183 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 STARD8Q92502 1023 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 TPD52L3Q96J77 140 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 MTERF1Q99551 399 aaKnown RBP13.8□□□□□ -0.2
SCAF4-202ENST00000399804 PKMYT1Q99640 499 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 BOCQ9BWV1 1114 aa13.8□□□□□ -0.2
SCAF4-202ENST00000399804 C6orf203Q9P0P8 240 aaPredicted RBP13.8□□□□□ -0.2
SCAF4-202ENST00000399804 HMX2A2RU54 273 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CXCL10P02778 98 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CXCR2P25025 360 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TIE1P35590 1138 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ERVK-8P63133 956 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 PTPRRQ15256 657 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 IRGCQ6NXR0 463 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ZNF549Q6P9A3 640 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CHST15Q7LFX5 561 aaPredicted RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 MAGEB10Q96LZ2 347 aaPredicted RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 RIPOR3Q96MK2 946 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 YIPF2Q9BWQ6 316 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 PCDHAC1Q9H158 963 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ZBTB26Q9HCK0 441 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SLC22A14Q9Y267 594 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TTC3P53804 2025 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SLC22A2O15244 555 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 HTR1BP28222 390 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 GGT5P36269 586 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ARL4DP49703 201 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CYP4F2P78329 520 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TRIM25Q14258 630 aaKnown RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TRIM74Q86UV6 250 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 C17orf64Q86WR6 236 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TEX26Q8N6G2 289 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 MYLIPQ8WY64 445 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 NUS1Q96E22 293 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TRMT61BQ9BVS5 477 aaKnown RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CAPN10Q9HC96 672 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 IGSF5Q9NSI5 407 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SCN4AP35499 1836 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CAPN8A6NHC0 703 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 H0Y858 1186 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 TIPRLO75663 272 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SMNDC1O75940 238 aaKnown RBP eCLIP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 EN2P19622 333 aaPredicted RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ATP6V1C1P21283 382 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ATP13A5Q4VNC0 1218 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 MTSS1LQ765P7 747 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ZNF276Q8N554 614 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CCDC106Q9BWC9 280 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 C20orf27Q9GZN8 174 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 IL26Q9NPH9 171 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 C1orf109Q9NX04 203 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CACNA2D2Q9NY47 1150 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 NKX1-2Q9UD57 310 aaPredicted RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 LOC730098B7Z3J9 87 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 CLOCKO15516 846 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ZSCAN9O15535 394 aaPredicted RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 RB1P06400 928 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 XRCC1P18887 633 aaPredicted RBP13.79□□□□□ -0.2
SCAF4-202ENST00000399804 KIR3DL1P43629 444 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SLC7A9P82251 487 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 PTCHD3Q3KNS1 767 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 BHLHA9Q7RTU4 235 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 LIX1Q8N485 282 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 ATG16L2Q8NAA4 619 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SHKBP1Q8TBC3 707 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 SCRN2Q96FV2 425 aa13.79□□□□□ -0.2
SCAF4-202ENST00000399804 PSME4Q14997 1843 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 TRBV23OR9-2A0A075B6M9 112 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 EDDM13A0A1B0GTR0 161 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 HEPACAM2A8MVW5 462 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 ISM1B1AKI9 464 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 TULP3O75386 442 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 CLPTM1O96005 669 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 CLCN4P51793 760 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 LIPEQ05469 1076 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 FAM174BQ3ZCQ3 159 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 ZNF805Q5CZA5 627 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 GOLGA7Q7Z5G4 137 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 ANKRD46Q86W74 232 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 ZDHHC13Q8IUH4 622 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 CNTN4Q8IWV2 1026 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 OR2T12Q8NG77 320 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 C9orf16Q9BUW7 83 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 EBF2Q9HAK2 575 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 BLOC1S6Q9UL45 172 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 GRXCR1A8MXD5 290 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 STX16O14662 325 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 FAM58BPP0C7Q3 252 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 GNAZP19086 355 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 CRATP43155 626 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 MPP7Q5T2T1 576 aa13.78□□□□□ -0.2
SCAF4-202ENST00000399804 MAGEE2Q8TD90 523 aaPredicted RBP13.78□□□□□ -0.2
SCAF4-202ENST00000399804 PTERQ96BW5 349 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms