RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 COLEC10Q9Y6Z7 277 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 HGSO14964 777 aaPredicted RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 KPNA5O15131 536 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 B4GAT1O43505 415 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 SEC31AO94979 1220 aaKnown RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 AMD1P17707 334 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 CD1CP29017 333 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 RBMS1P29558 406 aaKnown RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 SLC19A1P41440 591 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 CAPZBP47756 277 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 LSSP48449 732 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 CD151P48509 253 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 C2orf54Q08AI8 447 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 SQSTM1Q13501 440 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 GPR18Q14330 331 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 KRT33BQ14525 404 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 SEMA3AQ14563 771 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 CLCA4Q14CN2 919 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 HIF1AQ16665 826 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 WHAMMP3Q1A5X7 153 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 TYSND1Q2T9J0 566 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 PTRHD1Q6GMV3 140 aaKnown RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 WDR74Q6RFH5 385 aaPredicted RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 PLXDC1Q8IUK5 500 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 SLITRK4Q8IW52 837 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 GSDMBQ8TAX9 411 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 ZFPM2Q8WW38 1151 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 ZNF592Q92610 1267 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 LRRC39Q96DD0 335 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 CCDC97Q96F63 343 aaPredicted RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 FAM167BQ9BTA0 163 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 TRIM31Q9BZY9 425 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 SLC40A1Q9NP59 571 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 INTS10Q9NVR2 710 aaKnown RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 SCHIP1Q9P0W5 487 aaPredicted RBP12.71□□□□□ -0.37
CLK3-224ENST00000568605 CDC23Q9UJX2 597 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 SATB2Q9UPW6 733 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 WDR37Q9Y2I8 494 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 PCDHGA8Q9Y5G5 932 aa12.71□□□□□ -0.37
CLK3-224ENST00000568605 APC2O95996 2303 aa12.71□□□□□ -0.38
CLK3-224ENST00000568605 ANKRD11Q6UB99 2663 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 MN1Q10571 1320 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 H3BMM5 538 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 KDM1AO60341 852 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 OR1I1O60431 355 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 URI1O94763 535 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 UBXN7O94888 489 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 MPOP05164 745 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 APOA4P06727 396 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 JMJD7P0C870 316 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 THRAP10827 490 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 RPS3P23396 243 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLK3-224ENST00000568605 CSF2RBP32927 897 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 LIMK2P53671 638 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 ITGA8P53708 1063 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 EIF3BP55884 814 aaKnown RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 ARL4CP56559 192 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 TUBB2AQ13885 445 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 LONRF1Q17RB8 773 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 ANKRD20A4Q4UJ75 823 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 ZNF470Q6ECI4 717 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 HIBCHQ6NVY1 386 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 TMEM71Q6P5X7 295 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 IGF2-ASQ6U949 168 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 CES3Q6UWW8 571 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 USP53Q70EK8 1073 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 RAB11FIP2Q7L804 512 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 ZNF572Q7Z3I7 529 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 B3GNT8Q7Z7M8 397 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 TMEM135Q86UB9 458 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 PDZD3Q86UT5 571 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 KDF1Q8NAX2 398 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLK3-224ENST00000568605 GPR150Q8NGU9 434 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 MDM1Q8TC05 714 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 NAT14Q8WUY8 206 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 ASZ1Q8WWH4 475 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 SIGLEC10Q96LC7 697 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 CCDC74BQ96LY2 380 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 RMDN2Q96LZ7 410 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 NUDT22Q9BRQ3 303 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 TUBB2BQ9BVA1 445 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 CARD6Q9BX69 1037 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 TBC1D10AQ9BXI6 508 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 CCDC68Q9H2F9 335 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 THSD1Q9NS62 852 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 MARCH4Q9P2E8 410 aaPredicted RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 UTP11Q9Y3A2 253 aaKnown RBP12.7□□□□□ -0.38
CLK3-224ENST00000568605 PRSS21Q9Y6M0 314 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 SDK2Q58EX2 2172 aa12.7□□□□□ -0.38
CLK3-224ENST00000568605 USP24Q9UPU5 2620 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 PLD2O14939 933 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 BRINP1O60477 761 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 DXOO77932 396 aaKnown RBP12.69□□□□□ -0.38
CLK3-224ENST00000568605 ESR1P03372 595 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 RPN2P04844 631 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 IVDP26440 423 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 ARNTP27540 789 aa12.69□□□□□ -0.38
CLK3-224ENST00000568605 CSTF2P33240 577 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLK3-224ENST00000568605 ZFP36L1Q07352 338 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms