RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 BBS10Q8TAM1 723 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 SLC38A5Q8WUX1 472 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 FAM81BQ96LP2 452 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 RMDN2Q96LZ7 410 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 QRFPRQ96P65 431 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 LRRC3BQ96PB8 259 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 FNDC11Q9BVV2 318 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 SLA2Q9H6Q3 261 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 POT1Q9NUX5 634 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 OSER1Q9NX31 292 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 KLHL9Q9P2J3 617 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 SNX9Q9Y5X1 595 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 SNX5Q9Y5X3 404 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 PTPRCP08575 1304 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 PRSS51A0A1B0GVH4 220 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 LINC01553A4QN01 128 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 TMEM221A6NGB7 291 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 RFPL2O75678 378 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 SERPINI2O75830 405 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 SIX3O95343 332 aaPredicted RBP7.15□□□□□ -1.26
NUP54-215ENST00000514313 GBAP04062 536 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 ZFYP08048 801 aaPredicted RBP7.15□□□□□ -1.26
NUP54-215ENST00000514313 SRCP12931 536 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 COG7P83436 770 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 PPP2R5CQ13362 524 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 NHSL2Q5HYW2 709 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 DET1Q7L5Y6 550 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 OTOAQ7RTW8 1153 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 MAP7D3Q8IWC1 876 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 PRR26Q8N8Z3 221 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 PAPD5Q8NDF8 572 aaKnown RBP7.15□□□□□ -1.26
NUP54-215ENST00000514313 EXT2Q93063 718 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 RPL36ALQ969Q0 106 aaKnown RBP7.15□□□□□ -1.26
NUP54-215ENST00000514313 SLAMF9Q96A28 289 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 MUS81Q96NY9 551 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 SEPHS2Q99611 448 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 WNT5BQ9H1J7 359 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 PCDH9Q9HC56 1237 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 HHATLQ9HCP6 504 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 PTGFRNQ9P2B2 879 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 KCNK7Q9Y2U2 307 aa7.15□□□□□ -1.26
NUP54-215ENST00000514313 A0A087WV48 116 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 A0A0U1RQJ8 604 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 HTR3EA5X5Y0 456 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 TMEM178BH3BS89 294 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 SOCS2O14508 198 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 PTGESO14684 152 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 RAB40ALP0C0E4 278 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 TMEM191BP0C7N4 346 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 IGHV4-30-4P0DP06 118 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 TCEA1P23193 301 aaKnown RBP7.14□□□□□ -1.27
NUP54-215ENST00000514313 HOXD3P31249 432 aaPredicted RBP7.14□□□□□ -1.27
NUP54-215ENST00000514313 TCF7P36402 384 aaPredicted RBP7.14□□□□□ -1.27
NUP54-215ENST00000514313 LIMK1P53667 647 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 TUBB4BP68371 445 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 BNC1Q01954 994 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 YWHAHQ04917 246 aaPredicted RBP7.14□□□□□ -1.27
NUP54-215ENST00000514313 SETMARQ53H47 684 aaPredicted RBP7.14□□□□□ -1.27
NUP54-215ENST00000514313 C6orf136Q5SQH8 315 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 ABI3BPQ7Z7G0 1075 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 GLCCI1Q86VQ1 547 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 MSANTD4Q8NCY6 345 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 OR52I2Q8NH67 350 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 MAGEC3Q8TD91 643 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 PPP4R1Q8TF05 950 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 EGFL8Q99944 293 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 KATNB1Q9BVA0 655 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 KRTAP9-3Q9BYQ3 159 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 DNAI2Q9GZS0 605 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 MTRRQ9UBK8 725 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 RNF150Q9ULK6 438 aa7.14□□□□□ -1.27
NUP54-215ENST00000514313 MEIS2O14770 477 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 OR10H2O60403 315 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 TSPAN1O60635 241 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 WISP2O76076 250 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GAGE7O76087 117 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GOSR1O95249 250 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 OR2T7P0C7T2 308 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GAGE12FP0CL80 117 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GAGE12GP0CL81 117 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GAGE12IP0CL82 117 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 ATP6V1B1P15313 513 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 S1PR1P21453 382 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 CD38P28907 300 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 CRKLP46109 303 aaKnown RBP7.13□□□□□ -1.27
NUP54-215ENST00000514313 BRWD1-AS2P59051 145 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 PDE1BQ01064 536 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 Q0VFX4 171 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GAGE1Q13065 139 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GAGE4Q13068 117 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 CDC37Q16543 378 aaPredicted RBP7.13□□□□□ -1.27
NUP54-215ENST00000514313 TYSND1Q2T9J0 566 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 EFHC1Q5JVL4 640 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 FAM109BQ6ICB4 259 aaPredicted RBP7.13□□□□□ -1.27
NUP54-215ENST00000514313 CCNI2Q6ZMN8 369 aaPredicted RBP7.13□□□□□ -1.27
NUP54-215ENST00000514313 PIM3Q86V86 326 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 CARNMT1Q8N4J0 409 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 TMCO5AQ8N6Q1 288 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 FIBINQ8TAL6 211 aa7.13□□□□□ -1.27
NUP54-215ENST00000514313 GRK7Q8WTQ7 553 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms