RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 BDH2Q9BUT1 245 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 PAIP1Q9H074 479 aaKnown RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 CATSPERZQ9NTU4 200 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ZIM2Q9NZV7 527 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ZDHHC2Q9UIJ5 367 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 DNAJC25-GNG10A0A024R161 153 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 A8MVJ9 347 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 PRSS44E7EML9 344 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 TBC1D4O60343 1298 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 HGFP14210 728 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 HOXA11P31270 313 aaPredicted RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 CAPRIN1Q14444 709 aaKnown RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 TRIM16LQ309B1 348 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 C6orf52Q5T4I8 152 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 MON1AQ86VX9 555 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 DHRSXQ8N5I4 330 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FAM156AQ8NDB6 213 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 MAP6Q96JE9 813 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ZFYVE19Q96K21 471 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 PRICKLE1Q96MT3 831 aaPredicted RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 SLC25A51Q9H1U9 297 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 MCCC2Q9HCC0 563 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 A0A1W2PQ72 361 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 CCDC154A6NI56 674 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 AZIN1O14977 448 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 RRP8O43159 456 aaKnown RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 FGF18O76093 207 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 SNAP29O95721 258 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 CLUP10909 449 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FMO4P31512 558 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 PGGT1BP53609 377 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 GK3PQ14409 553 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 HERC3Q15034 1050 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ATP6AP1LQ52LC2 224 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 CRTC2Q53ET0 693 aaPredicted RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 FAM205BPQ63HN1 556 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 KIAA0930Q6ICG6 404 aaPredicted RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 HERC6Q8IVU3 1022 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FNDC5Q8NAU1 212 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 GANCQ8TET4 914 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 GATA6Q92908 595 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 SLC47A1Q96FL8 570 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 AHCYL2Q96HN2 611 aaKnown RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 NSMCE2Q96MF7 247 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ADGRE3Q9BY15 652 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 SEMA4BQ9NPR2 832 aaPredicted RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 ARMC1Q9NVT9 282 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 C17orf113A0A1B0GUU1 675 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 NEMP2A6NFY4 417 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FAM72CH0Y354 149 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 BTN3A1O00481 513 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 URODP06132 367 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 SLC1A2P43004 574 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 ETV1P50549 477 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 CLCN4P51793 760 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 TLR1Q15399 786 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FAM72AQ5TYM5 149 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 RAP1GAP2Q684P5 730 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 CYB5R2Q6BCY4 276 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FAM72DQ6L9T8 149 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FAM72BQ86X60 149 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 OR56A4Q8NGH8 313 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 FTHL17Q9BXU8 183 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 SLC39A8Q9C0K1 460 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 NOL11Q9H8H0 719 aaKnown RBP10.33□□□□□ -0.76
LIG1-220ENST00000601091 SCUBE2Q9NQ36 999 aa10.33□□□□□ -0.76
LIG1-220ENST00000601091 WNK3Q9BYP7 1800 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 E9PAM4 449 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 DCLK1O15075 740 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 MAN1A2O60476 641 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CCNKO75909 580 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 S100A9P06702 114 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 HLA-FP30511 346 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 TUSC3Q13454 348 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 HNRNPDQ14103 355 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 NR6A1Q15406 480 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 PHKG1Q16816 387 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 GPR158Q5T848 1215 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 NDUFAF5Q5TEU4 345 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 NLGN2Q8NFZ4 835 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 HAPLN3Q96S86 360 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 HOPXQ9BPY8 73 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 KIFC1Q9BW19 673 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ASPSCR1Q9BZE9 553 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 PNPLA3Q9NST1 481 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 SEPT3Q9UH03 358 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ERVK-11Q9UQG0 969 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 EIF3LQ9Y262 564 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 DHRS12A0PJE2 317 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 STX16-NPEPL1H3BU86 382 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 TP53P04637 393 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 GSTM1P09488 218 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CXCR3P49682 368 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 TSTA3Q13630 321 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 TIGD6Q17RP2 521 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 OTUD3Q5T2D3 398 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 TSTD2Q5T7W7 516 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ERICH5Q6P6B1 374 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CNSTQ6PJW8 725 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 KBTBD7Q8WVZ9 684 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms