RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 UBA7P41226 1012 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 GARSP41250 739 aaKnown RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 ZBED6P86452 979 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 RHAGQ02094 409 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 HTR4Q13639 388 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 FRG1Q14331 258 aaKnown RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 ZSCAN23Q3MJ62 389 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 TXNDC8Q6A555 127 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 JADE1Q6IE81 842 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 ZNF474Q6S9Z5 364 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 GLDNQ6ZMI3 551 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 RTL10Q7L3V2 364 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 KDELC2Q7Z4H8 507 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 SERINC5Q86VE9 423 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 TMC8Q8IU68 726 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 HDDC3Q8N4P3 179 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 KCTD6Q8NC69 237 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 FAM110DQ8TAY7 271 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 DNAAF4Q8WXU2 420 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 CAVIN3Q969G5 261 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 PERPQ96FX8 193 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 VMP1Q96GC9 406 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 C1orf74Q96LT6 269 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 TMEM68Q96MH6 324 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 PLEKHF1Q96S99 279 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 APOL6Q9BWW8 343 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 OSGEPL1Q9H4B0 414 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 Q9N2J8 555 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 PDE7BQ9NP56 450 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 RNF146Q9NTX7 359 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 PSD3Q9NYI0 1048 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 PPIEQ9UNP9 301 aaKnown RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 CARD8Q9Y2G2 431 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 AAR2Q9Y312 384 aaKnown RBP4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 ADAM18Q9Y3Q7 739 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 FAM169AQ9Y6X4 670 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 GON4LQ3T8J9 2241 aa4.8□□□□□ -1.64
HMGB1P23-201ENST00000518743 PI4KAP42356 2102 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ATRQ13535 2644 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ATG2BQ96BY7 2078 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 LAMA4Q16363 1823 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 C17orf102A2RUQ5 167 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 TRABD2BA6NFA1 517 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 LINC00473A8K010 186 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 POC1B-GALNT4F8VUJ3 575 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 CDX4O14627 284 aaPredicted RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 LDLRAD4O15165 306 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 MSI1O43347 362 aaKnown RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 HCRTR2O43614 444 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 OR2C1O95371 312 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 CXCL14O95715 111 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 DRD4P21917 467 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 SHMT1P34896 483 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 SLC15A1P46059 708 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 CAPZA2P47755 286 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ATXN3P54252 364 aaPredicted RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 TUBA3CQ13748 450 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 GALNT3Q14435 633 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 RNPS1Q15287 305 aaKnown RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ADIPOQQ15848 244 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 KYNUQ16719 465 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 BMP2KLQ5H9B9 411 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 TUBA3EQ6PEY2 450 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 C11orf88Q6PI97 169 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 RNF207Q6ZRF8 634 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 TMEM179Q6ZVK1 233 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 RNF144BQ7Z419 303 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 GPAT4Q86UL3 456 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 EPHX4Q8IUS5 362 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 MRPL43Q8N983 215 aaKnown RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 POGLUT1Q8NBL1 392 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 HDAC7Q8WUI4 952 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 FAR1Q8WVX9 515 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 PSPC1Q8WXF1 523 aaKnown RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 EXTL1Q92935 676 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 MED8Q96G25 268 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 RPP25Q9BUL9 199 aaKnown RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 LMAN1LQ9HAT1 526 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 PFDN4Q9NQP4 134 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 HEBP1Q9NRV9 189 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 PLEKHB1Q9UF11 243 aaPredicted RBP4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ST6GALNAC2Q9UJ37 374 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ICKQ9UPZ9 632 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 BTBD3Q9Y2F9 522 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 FAM96BQ9Y3D0 163 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 CAPN7Q9Y6W3 813 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 KAT6AQ92794 2004 aa4.79□□□□□ -1.64
HMGB1P23-201ENST00000518743 ADGRG4Q8IZF6 3080 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 KNTC1P50748 2209 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 CELSR1Q9NYQ6 3014 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 IL16Q14005 1332 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 C17orf100A8MU93 164 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 UBE2CO00762 179 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 PSMA7O14818 248 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 TP73O15350 636 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 HS6ST1O60243 411 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 RHOBTB1O94844 696 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 TFP02787 698 aa4.78□□□□□ -1.64
HMGB1P23-201ENST00000518743 TUBB4AP04350 444 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms