RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W LAM4P38800 1345 aa6.95□□□□□ -1.3
SHP1YBL058W MOT1P32333 1867 aa6.94□□□□□ -1.3
SHP1YBL058W YUR1P26725 428 aa6.94□□□□□ -1.3
SHP1YBL058W PRO3P32263 286 aaKnown RBP6.94□□□□□ -1.3
SHP1YBL058W PHO88P38264 188 aaPredicted RBP6.94□□□□□ -1.3
SHP1YBL058W YGL039WP53183 348 aaKnown RBP6.94□□□□□ -1.3
SHP1YBL058W PKH3Q03306 898 aaPredicted RBP6.94□□□□□ -1.3
SHP1YBL058W SLD5Q03406 294 aa6.94□□□□□ -1.3
SHP1YBL058W PDC1P06169 563 aaKnown RBP6.93□□□□□ -1.3
SHP1YBL058W TGL1P34163 548 aa6.93□□□□□ -1.3
SHP1YBL058W OSH3P38713 996 aaKnown RBP6.93□□□□□ -1.3
SHP1YBL058W VPS8P39702 1274 aa6.93□□□□□ -1.3
SHP1YBL058W SLN1P39928 1220 aaPredicted RBP6.93□□□□□ -1.3
SHP1YBL058W VPS53P47061 822 aa6.93□□□□□ -1.3
SHP1YBL058W POL32P47110 350 aa6.93□□□□□ -1.3
SHP1YBL058W TMA64Q04600 565 aaKnown RBP6.93□□□□□ -1.3
SHP1YBL058W MSC6Q08818 692 aaKnown RBP6.93□□□□□ -1.3
SHP1YBL058W YDR524C-BQ3E6R4 66 aa6.93□□□□□ -1.3
SHP1YBL058W MYO1P08964 1928 aa6.92□□□□□ -1.3
SHP1YBL058W MRPS35P53292 345 aa6.92□□□□□ -1.3
SHP1YBL058W DUS3Q06053 668 aaKnown RBP6.92□□□□□ -1.3
SHP1YBL058W CSC1Q06538 782 aa6.92□□□□□ -1.3
SHP1YBL058W ISA1Q07821 250 aaPredicted RBP6.92□□□□□ -1.3
SHP1YBL058W TAH18Q12181 623 aa6.92□□□□□ -1.3
SHP1YBL058W CHL1P22516 861 aaPredicted RBP6.91□□□□□ -1.3
SHP1YBL058W MCM4P30665 933 aaKnown RBP6.91□□□□□ -1.3
SHP1YBL058W SEC8P32855 1065 aa6.91□□□□□ -1.3
SHP1YBL058W KIC1P38692 1080 aa6.91□□□□□ -1.3
SHP1YBL058W RRP8P38961 392 aaKnown RBP6.91□□□□□ -1.3
SHP1YBL058W DMA2P53924 522 aa6.91□□□□□ -1.3
SHP1YBL058W ERP3Q12403 225 aa6.91□□□□□ -1.3
SHP1YBL058W POX1P13711 748 aa6.9□□□□□ -1.3
SHP1YBL058W IRE1P32361 1115 aa6.9□□□□□ -1.3
SHP1YBL058W GPT2P36148 743 aa6.9□□□□□ -1.3
SHP1YBL058W DAK1P54838 584 aaKnown RBP6.9□□□□□ -1.3
SHP1YBL058W YMR321CQ04898 105 aa6.9□□□□□ -1.3
SHP1YBL058W SPH1Q06160 661 aa6.9□□□□□ -1.3
SHP1YBL058W SUE1Q06524 206 aa6.9□□□□□ -1.3
SHP1YBL058W TFC4P33339 1025 aa6.89□□□□□ -1.31
SHP1YBL058W DBP7P36120 742 aaKnown RBP6.89□□□□□ -1.31
SHP1YBL058W YHR131CP38835 850 aa6.89□□□□□ -1.31
SHP1YBL058W YNR014WP53719 212 aa6.89□□□□□ -1.31
SHP1YBL058W RPS15Q01855 142 aaKnown RBP6.89□□□□□ -1.31
SHP1YBL058W RTP1Q12751 981 aa6.89□□□□□ -1.31
SHP1YBL058W OPI1P21957 404 aa6.88□□□□□ -1.31
SHP1YBL058W RIT1P23796 513 aa6.88□□□□□ -1.31
SHP1YBL058W KTR1P27810 393 aaKnown RBP6.88□□□□□ -1.31
SHP1YBL058W MCR1P36060 302 aaKnown RBP6.88□□□□□ -1.31
SHP1YBL058W JHD1P40034 492 aa6.88□□□□□ -1.31
SHP1YBL058W RSC8P43609 557 aaKnown RBP6.88□□□□□ -1.31
SHP1YBL058W DAN4P47179 1161 aa6.88□□□□□ -1.31
SHP1YBL058W FOL2P51601 243 aaKnown RBP6.88□□□□□ -1.31
SHP1YBL058W FOL1P53848 824 aa6.88□□□□□ -1.31
SHP1YBL058W UFD2P54860 961 aa6.88□□□□□ -1.31
SHP1YBL058W VPS30Q02948 557 aa6.88□□□□□ -1.31
SHP1YBL058W UTP4Q06679 776 aaKnown RBP6.88□□□□□ -1.31
SHP1YBL058W GUD1Q07729 489 aa6.88□□□□□ -1.31
SHP1YBL058W TRM11Q12463 433 aa6.88□□□□□ -1.31
SHP1YBL058W RKM4Q12504 494 aa6.88□□□□□ -1.31
SHP1YBL058W SNA3P14359 133 aa6.87□□□□□ -1.31
SHP1YBL058W TKL1P23254 680 aaKnown RBP6.87□□□□□ -1.31
SHP1YBL058W POT1P27796 417 aaKnown RBP RIP-Chip data6.87□□□□□ -1.31not detected
SHP1YBL058W MYO3P36006 1272 aa6.87□□□□□ -1.31
SHP1YBL058W MET1P36150 593 aa6.87□□□□□ -1.31
SHP1YBL058W FLR1P38124 548 aa6.87□□□□□ -1.31
SHP1YBL058W POA1P38218 177 aa6.87□□□□□ -1.31
SHP1YBL058W REG2P38232 338 aa6.87□□□□□ -1.31
SHP1YBL058W SAP30P38429 201 aa6.87□□□□□ -1.31
SHP1YBL058W NDT80P38830 627 aa6.87□□□□□ -1.31
SHP1YBL058W CTR1P49573 406 aa6.87□□□□□ -1.31
SHP1YBL058W MCM6P53091 1017 aaKnown RBP6.87□□□□□ -1.31
SHP1YBL058W YNR021WP53723 404 aaKnown RBP6.87□□□□□ -1.31
SHP1YBL058W HDA1P53973 706 aa6.87□□□□□ -1.31
SHP1YBL058W VPS72Q03388 795 aa6.87□□□□□ -1.31
SHP1YBL058W BRE1Q07457 700 aaKnown RBP6.87□□□□□ -1.31
SHP1YBL058W TY1B-AO13527 1196 aaKnown RBP6.86□□□□□ -1.31
SHP1YBL058W NUC1P08466 329 aa6.86□□□□□ -1.31
SHP1YBL058W CAD1P24813 409 aaKnown RBP6.86□□□□□ -1.31
SHP1YBL058W VPS45P38932 577 aa6.86□□□□□ -1.31
SHP1YBL058W STM1P39015 273 aaKnown RBP6.86□□□□□ -1.31
SHP1YBL058W ATF2P53296 535 aa6.86□□□□□ -1.31
SHP1YBL058W YNL115CP53925 644 aa6.86□□□□□ -1.31
SHP1YBL058W CLF1Q12309 687 aaPredicted RBP6.86□□□□□ -1.31
SHP1YBL058W PHR1P05066 565 aaKnown RBP RIP-Chip data6.85□□□□□ -1.31not detected
SHP1YBL058W GUT1P32190 709 aa6.85□□□□□ -1.31
SHP1YBL058W ANP1P32629 500 aa6.85□□□□□ -1.31
SHP1YBL058W PRE3P38624 215 aa6.85□□□□□ -1.31
SHP1YBL058W RFC1P38630 861 aaKnown RBP6.85□□□□□ -1.31
SHP1YBL058W RGA1P39083 1007 aa6.85□□□□□ -1.31
SHP1YBL058W YML020WQ03722 664 aa6.85□□□□□ -1.31
SHP1YBL058W CDC16P09798 840 aa6.84□□□□□ -1.31
SHP1YBL058W MAS2P11914 482 aa6.84□□□□□ -1.31
SHP1YBL058W RPL8BP29453 256 aaKnown RBP6.84□□□□□ -1.31
SHP1YBL058W DCW1P36091 449 aa6.84□□□□□ -1.31
SHP1YBL058W GUA1P38625 525 aaKnown RBP6.84□□□□□ -1.31
SHP1YBL058W BRL1P38770 471 aa6.84□□□□□ -1.31
SHP1YBL058W SGM1P47166 707 aa6.84□□□□□ -1.31
SHP1YBL058W SEC20P28791 383 aa6.83□□□□□ -1.32
SHP1YBL058W PRS1P32895 427 aaKnown RBP6.83□□□□□ -1.32
SHP1YBL058W LSB1P53281 241 aa6.83□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 36.6 ms