RNA–Protein interactions for RNA: ENST00000641513.1

PHGDH-219, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-219ENST00000641513 MCM10Q7L590 875 aa11.42□□□□□ -0.58
PHGDH-219ENST00000641513 AXIN2Q9Y2T1 843 aa11.42□□□□□ -0.58
PHGDH-219ENST00000641513 LMO7Q8WWI1 1683 aa11.42□□□□□ -0.58
PHGDH-219ENST00000641513 KIAA0232Q92628 1395 aa11.41□□□□□ -0.58
PHGDH-219ENST00000641513 ABCC6O95255 1503 aa11.41□□□□□ -0.58
PHGDH-219ENST00000641513 IFT57Q9NWB7 429 aa11.41□□□□□ -0.58
PHGDH-219ENST00000641513 NLRP2Q9NX02 1062 aa11.41□□□□□ -0.58
PHGDH-219ENST00000641513 AHDC1Q5TGY3 1603 aaPredicted RBP11.4□□□□□ -0.58
PHGDH-219ENST00000641513 EXOC6Q8TAG9 804 aa11.4□□□□□ -0.58
PHGDH-219ENST00000641513 FRAT1Q92837 279 aaPredicted RBP11.4□□□□□ -0.58
PHGDH-219ENST00000641513 ANP32EQ9BTT0 268 aa11.4□□□□□ -0.58
PHGDH-219ENST00000641513 PRDM11Q9NQV5 511 aa11.4□□□□□ -0.58
PHGDH-219ENST00000641513 GNAT3A8MTJ3 354 aa11.39□□□□□ -0.59
PHGDH-219ENST00000641513 CT47B1P0C2W7 299 aaPredicted RBP11.39□□□□□ -0.59
PHGDH-219ENST00000641513 RARSP54136 660 aaKnown RBP11.39□□□□□ -0.59
PHGDH-219ENST00000641513 B4GALNT3Q6L9W6 998 aa11.39□□□□□ -0.59
PHGDH-219ENST00000641513 CRBNQ96SW2 442 aa11.39□□□□□ -0.59
PHGDH-219ENST00000641513 BCL2L13Q9BXK5 485 aa11.39□□□□□ -0.59
PHGDH-219ENST00000641513 MBIPQ9NS73 344 aa11.39□□□□□ -0.59
PHGDH-219ENST00000641513 MAP3K5Q99683 1374 aa11.39□□□□□ -0.59
PHGDH-219ENST00000641513 LRRC37A3O60309 1634 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 ERBB3P21860 1342 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 PARP4Q9UKK3 1724 aaKnown RBP11.38□□□□□ -0.59
PHGDH-219ENST00000641513 PIP4K2BP78356 416 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 PLEKHO1Q53GL0 409 aaPredicted RBP11.38□□□□□ -0.59
PHGDH-219ENST00000641513 CCDC136Q96JN2 1154 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 CFAP44Q96MT7 982 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 SMC4Q9NTJ3 1288 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 CPDO75976 1380 aa11.38□□□□□ -0.59
PHGDH-219ENST00000641513 SCN11AQ9UI33 1791 aa11.37□□□□□ -0.59
PHGDH-219ENST00000641513 HTATSF1O43719 755 aaKnown RBP11.37□□□□□ -0.59
PHGDH-219ENST00000641513 TOM1O60784 492 aa11.37□□□□□ -0.59
PHGDH-219ENST00000641513 C20orf194Q5TEA3 1177 aa11.37□□□□□ -0.59
PHGDH-219ENST00000641513 ZNF530Q6P9A1 599 aaPredicted RBP11.37□□□□□ -0.59
PHGDH-219ENST00000641513 RAPGEF4Q8WZA2 1011 aa11.37□□□□□ -0.59
PHGDH-219ENST00000641513 COL22A1Q8NFW1 1626 aaPredicted RBP11.37□□□□□ -0.59
PHGDH-219ENST00000641513 ELL2O00472 640 aaPredicted RBP11.36□□□□□ -0.59
PHGDH-219ENST00000641513 ZNF853P0CG23 659 aa11.36□□□□□ -0.59
PHGDH-219ENST00000641513 AMOTQ4VCS5 1084 aa11.36□□□□□ -0.59
PHGDH-219ENST00000641513 C1orf141Q5JVX7 400 aa11.36□□□□□ -0.59
PHGDH-219ENST00000641513 COL14A1Q05707 1796 aaKnown RBP11.36□□□□□ -0.59
PHGDH-219ENST00000641513 CACNA1FO60840 1977 aa11.36□□□□□ -0.59
PHGDH-219ENST00000641513 CRB1P82279 1406 aa11.35□□□□□ -0.59
PHGDH-219ENST00000641513 NCAPD2Q15021 1401 aa11.35□□□□□ -0.59
PHGDH-219ENST00000641513 TATP17735 454 aaPredicted RBP11.35□□□□□ -0.59
PHGDH-219ENST00000641513 EVA1CP58658 441 aa11.35□□□□□ -0.59
PHGDH-219ENST00000641513 MIS18AQ9NYP9 233 aa11.35□□□□□ -0.59
PHGDH-219ENST00000641513 TSPYL4Q9UJ04 414 aa11.35□□□□□ -0.59
PHGDH-219ENST00000641513 COL16A1Q07092 1604 aaPredicted RBP11.35□□□□□ -0.59
PHGDH-219ENST00000641513 KDM3BQ7LBC6 1761 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 UBAP1LF5GYI3 381 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 TWISTNBQ3B726 338 aaPredicted RBP11.34□□□□□ -0.59
PHGDH-219ENST00000641513 AKAP4Q5JQC9 854 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 TOM1L2Q6ZVM7 507 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 SSH1Q8WYL5 1049 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 STRN4Q9NRL3 753 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 PKD1L3Q7Z443 1732 aa11.34□□□□□ -0.59
PHGDH-219ENST00000641513 SIPA1L3O60292 1781 aaPredicted RBP11.33□□□□□ -0.59
PHGDH-219ENST00000641513 PLCH1Q4KWH8 1693 aa11.33□□□□□ -0.6
PHGDH-219ENST00000641513 CHL1O00533 1208 aa11.33□□□□□ -0.6
PHGDH-219ENST00000641513 ZKSCAN2Q63HK3 967 aa11.33□□□□□ -0.6
PHGDH-219ENST00000641513 TSPYL6Q8N831 410 aa11.33□□□□□ -0.6
PHGDH-219ENST00000641513 C8orf58Q8NAV2 365 aa11.33□□□□□ -0.6
PHGDH-219ENST00000641513 PANK1Q8TE04 598 aa11.33□□□□□ -0.6
PHGDH-219ENST00000641513 COL5A2P05997 1499 aaPredicted RBP11.32□□□□□ -0.6
PHGDH-219ENST00000641513 TCERG1O14776 1098 aaKnown RBP11.32□□□□□ -0.6
PHGDH-219ENST00000641513 VAMP4O75379 141 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 MS4A1P11836 297 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 TEFQ10587 303 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 PDE3AQ14432 1141 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 ALDH1L2Q3SY69 923 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 MPRIPQ6WCQ1 1025 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 FTSJ3Q8IY81 847 aaKnown RBP11.32□□□□□ -0.6
PHGDH-219ENST00000641513 IL17REQ8NFR9 667 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 CLUAP1Q96AJ1 413 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 ZNF428Q96B54 188 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 SPG7Q9UQ90 795 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 KAT6BQ8WYB5 2073 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 WDR17Q8IZU2 1322 aa11.32□□□□□ -0.6
PHGDH-219ENST00000641513 MEGF6O75095 1541 aa11.31□□□□□ -0.6
PHGDH-219ENST00000641513 IPO8O15397 1037 aaKnown RBP11.31□□□□□ -0.6
PHGDH-219ENST00000641513 TAF7Q15545 349 aaPredicted RBP11.31□□□□□ -0.6
PHGDH-219ENST00000641513 CERKQ8TCT0 537 aa11.31□□□□□ -0.6
PHGDH-219ENST00000641513 LGR6Q9HBX8 967 aa11.31□□□□□ -0.6
PHGDH-219ENST00000641513 NOB1Q9ULX3 412 aaKnown RBP11.31□□□□□ -0.6
PHGDH-219ENST00000641513 COG6Q9Y2V7 657 aa11.31□□□□□ -0.6
PHGDH-219ENST00000641513 KIF16BQ96L93 1317 aa11.31□□□□□ -0.6
PHGDH-219ENST00000641513 WNK3Q9BYP7 1800 aa11.3□□□□□ -0.6
PHGDH-219ENST00000641513 NUTM2BA6NNL0 878 aaPredicted RBP11.3□□□□□ -0.6
PHGDH-219ENST00000641513 NUTM2EB1AL46 878 aaPredicted RBP11.3□□□□□ -0.6
PHGDH-219ENST00000641513 KRT24Q2M2I5 525 aa11.3□□□□□ -0.6
PHGDH-219ENST00000641513 NUTM2AQ8IVF1 878 aaPredicted RBP11.3□□□□□ -0.6
PHGDH-219ENST00000641513 TNNQ9UQP3 1299 aa11.3□□□□□ -0.6
PHGDH-219ENST00000641513 RNMTO43148 476 aaKnown RBP11.29□□□□□ -0.6
PHGDH-219ENST00000641513 DZIP1LQ8IYY4 767 aaKnown RBP11.29□□□□□ -0.6
PHGDH-219ENST00000641513 BTG4Q9NY30 223 aa11.29□□□□□ -0.6
PHGDH-219ENST00000641513 SHANK3Q9BYB0 1731 aa11.29□□□□□ -0.6
PHGDH-219ENST00000641513 ADAMTS7Q9UKP4 1686 aa11.28□□□□□ -0.6
PHGDH-219ENST00000641513 ADAMTS2O95450 1211 aa11.28□□□□□ -0.6
PHGDH-219ENST00000641513 LARP1Q6PKG0 1096 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms