RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZFP64Q9NPA5 681 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 GDF2Q9UK05 429 aaPredicted RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 DYRK1BQ9Y463 629 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 SCO2A0A1W2PP80 73 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 GNB5O14775 395 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 LILRA1O75019 489 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 ADD1P35611 737 aaKnown RBP2.3□□□□□ -2.04
VPS35-212ENST00000640313 CHRNA4P43681 627 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 GRIN2CQ14957 1233 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 INTS6LQ5JSJ4 861 aaKnown RBP2.3□□□□□ -2.04
VPS35-212ENST00000640313 PDXDC2PQ6P474 469 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 RIPOR1Q6ZS17 1223 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 PRICKLE2Q7Z3G6 844 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 EDARADDQ8WWZ3 215 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 KLRG1Q96E93 195 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 RRAGCQ9HB90 399 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 KDM2AQ9Y2K7 1162 aa2.3□□□□□ -2.04
VPS35-212ENST00000640313 RHOQP17081 205 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 GPC1P35052 558 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 GATA4P43694 442 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 RSPO4Q2I0M5 234 aaPredicted RBP2.29□□□□□ -2.04
VPS35-212ENST00000640313 WDR44Q5JSH3 913 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 NKAPLQ5M9Q1 402 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 NBPF11Q86T75 865 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 GOLGA6L1Q8N7Z2 621 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 CARD14Q9BXL6 1004 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 TBC1D2Q9BYX2 928 aa2.29□□□□□ -2.04
VPS35-212ENST00000640313 NOP53Q9NZM5 478 aaKnown RBP2.29□□□□□ -2.04
VPS35-212ENST00000640313 TUSC1Q2TAM9 212 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 ZNF784Q8NCA9 323 aaPredicted RBP2.28□□□□□ -2.04
VPS35-212ENST00000640313 CABLES1Q8TDN4 633 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 TRIM52Q96A61 297 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 SLC10A4Q96EP9 437 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 BTBD6Q96KE9 485 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 ARHGAP9Q9BRR9 750 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 BEGAINQ9BUH8 593 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 NUCKS1Q9H1E3 243 aaKnown RBP2.28□□□□□ -2.04
VPS35-212ENST00000640313 TMPRSS4Q9NRS4 437 aa2.28□□□□□ -2.04
VPS35-212ENST00000640313 SPATA31C2B4DYI2 1134 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 F11P03951 625 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 DGKGP49619 791 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 SLCO4C1Q6ZQN7 724 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 RIC3Q7Z5B4 369 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 ZBTB33Q86T24 672 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 GAS2L1Q99501 681 aaPredicted RBP2.27□□□□□ -2.05
VPS35-212ENST00000640313 PHF24Q9UPV7 400 aa2.27□□□□□ -2.05
VPS35-212ENST00000640313 ZC3H4Q9UPT8 1303 aaKnown RBP2.26□□□□□ -2.05
VPS35-212ENST00000640313 ERVH48-1M5A8F1 160 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 DYRK3O43781 588 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 LILRB3O75022 631 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 THBS1P07996 1170 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 EPXP11678 715 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 AMPD1P23109 780 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 POU4F2Q12837 409 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 LRP8Q14114 963 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 AMHR2Q16671 573 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 NBPF20Q3BBV1 942 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 PPP2R2DQ66LE6 453 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 NBPF10Q6P3W6 841 aaKnown RBP2.26□□□□□ -2.05
VPS35-212ENST00000640313 GIGYF2Q6Y7W6 1299 aaKnown RBP2.26□□□□□ -2.05
VPS35-212ENST00000640313 NBPF15Q8N660 670 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 OCSTAMPQ9BR26 566 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 GRIP2Q9C0E4 1043 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 GPSM3Q9Y4H4 160 aa2.26□□□□□ -2.05
VPS35-212ENST00000640313 ARID1BQ8NFD5 2236 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 NUTM2BA6NNL0 878 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 ESPNB1AK53 854 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 NUTM2EB1AL46 878 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 ATP5J2-PTCD1G3V325 749 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 C2CD2LO14523 706 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 HYAL3O43820 417 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 COBLO75128 1261 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 SPATA31C1P0DKV0 1188 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 YBX3P16989 372 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS35-212ENST00000640313 TXKP42681 527 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 PTK2Q05397 1052 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 UBAP2LQ14157 1087 aaKnown RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 LBRQ14739 615 aaKnown RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 PRSS36Q5K4E3 855 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 NUTM2DQ5VT03 806 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 NUTM2AQ8IVF1 878 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 HELBQ8NG08 1087 aaPredicted RBP2.25□□□□□ -2.05
VPS35-212ENST00000640313 TSC1Q92574 1164 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 KRTAP4-9Q9BYQ8 210 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 TIMMDC1Q9NPL8 285 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 TPSG1Q9NRR2 321 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 FKBPLQ9UIM3 349 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 GGA1Q9UJY5 639 aa2.25□□□□□ -2.05
VPS35-212ENST00000640313 A0A1W2PRU2 124 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 TULP1O00294 542 aaPredicted RBP2.24□□□□□ -2.05
VPS35-212ENST00000640313 ARAFP10398 606 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 BMP4P12644 408 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 TTLL12Q14166 644 aaPredicted RBP2.24□□□□□ -2.05
VPS35-212ENST00000640313 QPCTQ16769 361 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 SLC27A3Q5K4L6 730 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 CCDC125Q86Z20 511 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 RNF135Q8IUD6 432 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 SEPT12Q8IYM1 358 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 ADAM32Q8TC27 787 aa2.24□□□□□ -2.05
VPS35-212ENST00000640313 FMNL2Q96PY5 1086 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms