RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 ANO8Q9HCE9 1232 aaPredicted RBP24.48■■□□□ 1.51
PNKP-230ENST00000638016 SMG6Q86US8 1419 aaKnown RBP24.47■■□□□ 1.51
PNKP-230ENST00000638016 DOT1LQ8TEK3 1739 aa24.45■■□□□ 1.5
PNKP-230ENST00000638016 KIF24Q5T7B8 1368 aa24.44■■□□□ 1.5
PNKP-230ENST00000638016 KIF7Q2M1P5 1343 aa24.44■■□□□ 1.5
PNKP-230ENST00000638016 POLKQ9UBT6 870 aa24.44■■□□□ 1.5
PNKP-230ENST00000638016 TXNRD1Q16881 649 aa24.43■■□□□ 1.5
PNKP-230ENST00000638016 NBPF14Q5TI25 921 aa24.42■■□□□ 1.5
PNKP-230ENST00000638016 ZCRB1Q8TBF4 217 aaKnown RBP24.42■■□□□ 1.5
PNKP-230ENST00000638016 WASHC2AQ641Q2 1341 aa24.39■■□□□ 1.5
PNKP-230ENST00000638016 RAPGEF4Q8WZA2 1011 aa24.39■■□□□ 1.49
PNKP-230ENST00000638016 PDGFDQ9GZP0 370 aaPredicted RBP24.39■■□□□ 1.49
PNKP-230ENST00000638016 SYTL4Q96C24 671 aaPredicted RBP24.37■■□□□ 1.49
PNKP-230ENST00000638016 NSD2O96028 1365 aa24.37■■□□□ 1.49
PNKP-230ENST00000638016 NCAPD2Q15021 1401 aa24.36■■□□□ 1.49
PNKP-230ENST00000638016 TATP17735 454 aaPredicted RBP24.36■■□□□ 1.49
PNKP-230ENST00000638016 PRIM1P49642 420 aaKnown RBP24.36■■□□□ 1.49
PNKP-230ENST00000638016 EYA1Q99502 592 aa24.36■■□□□ 1.49
PNKP-230ENST00000638016 CASZ1Q86V15 1759 aa24.35■■□□□ 1.49
PNKP-230ENST00000638016 PAPPAQ13219 1627 aa24.35■■□□□ 1.49
PNKP-230ENST00000638016 EIF4A2Q14240 407 aaKnown RBP24.34■■□□□ 1.49
PNKP-230ENST00000638016 PKD1L3Q7Z443 1732 aa24.34■■□□□ 1.49
PNKP-230ENST00000638016 LRRC4BQ9NT99 713 aa24.33■■□□□ 1.49
PNKP-230ENST00000638016 TOGARAM1Q9Y4F4 1720 aa24.32■■□□□ 1.48
PNKP-230ENST00000638016 KCNQ4P56696 695 aa24.32■■□□□ 1.48
PNKP-230ENST00000638016 CYP27B1O15528 508 aa24.31■■□□□ 1.48
PNKP-230ENST00000638016 MORC1Q86VD1 984 aa24.31■■□□□ 1.48
PNKP-230ENST00000638016 KNSTRNQ9Y448 316 aa24.31■■□□□ 1.48
PNKP-230ENST00000638016 AMER1Q5JTC6 1135 aaPredicted RBP24.3■■□□□ 1.48
PNKP-230ENST00000638016 PCDH11XQ9BZA7 1347 aa24.3■■□□□ 1.48
PNKP-230ENST00000638016 PCDH11YQ9BZA8 1340 aa24.3■■□□□ 1.48
PNKP-230ENST00000638016 STK32BQ9NY57 414 aa24.29■■□□□ 1.48
PNKP-230ENST00000638016 SLC15A2Q16348 729 aa24.28■■□□□ 1.48
PNKP-230ENST00000638016 ZNF827Q17R98 1081 aa24.28■■□□□ 1.48
PNKP-230ENST00000638016 LY75O60449 1722 aa24.27■■□□□ 1.48
PNKP-230ENST00000638016 ZBTB7AO95365 584 aa24.25■■□□□ 1.47
PNKP-230ENST00000638016 ITGB4P16144 1822 aa24.25■■□□□ 1.47
PNKP-230ENST00000638016 PER1O15534 1290 aaPredicted RBP24.24■■□□□ 1.47
PNKP-230ENST00000638016 IGSF1Q8N6C5 1336 aa24.24■■□□□ 1.47
PNKP-230ENST00000638016 CNGB1Q14028 1251 aaPredicted RBP24.23■■□□□ 1.47
PNKP-230ENST00000638016 CC2D1BQ5T0F9 858 aaKnown RBP24.23■■□□□ 1.47
PNKP-230ENST00000638016 SPON1Q9HCB6 807 aa24.23■■□□□ 1.47
PNKP-230ENST00000638016 TUBGCP6Q96RT7 1819 aa24.23■■□□□ 1.47
PNKP-230ENST00000638016 AEBP1Q8IUX7 1158 aa24.21■■□□□ 1.47
PNKP-230ENST00000638016 ATF5Q9Y2D1 282 aaPredicted RBP24.21■■□□□ 1.47
PNKP-230ENST00000638016 MPRIPQ6WCQ1 1025 aa24.2■■□□□ 1.46
PNKP-230ENST00000638016 SPG7Q9UQ90 795 aa24.2■■□□□ 1.46
PNKP-230ENST00000638016 AKT1S1Q96B36 256 aa24.19■■□□□ 1.46
PNKP-230ENST00000638016 SLC27A3Q5K4L6 730 aa24.18■■□□□ 1.46
PNKP-230ENST00000638016 CCNL1Q9UK58 526 aaPredicted RBP24.18■■□□□ 1.46
PNKP-230ENST00000638016 PHKG2P15735 406 aa24.16■■□□□ 1.46
PNKP-230ENST00000638016 PTGER2P43116 358 aa24.16■■□□□ 1.46
PNKP-230ENST00000638016 NKX1-1Q15270 411 aaPredicted RBP24.16■■□□□ 1.46
PNKP-230ENST00000638016 PPP1R1BQ9UD71 204 aaPredicted RBP24.16■■□□□ 1.46
PNKP-230ENST00000638016 PALLDQ8WX93 1383 aa24.16■■□□□ 1.46
PNKP-230ENST00000638016 IL13P35225 146 aa24.15■■□□□ 1.46
PNKP-230ENST00000638016 PIGBQ92521 554 aa24.15■■□□□ 1.46
PNKP-230ENST00000638016 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.15■■□□□ 1.46
PNKP-230ENST00000638016 MTHFSP49914 203 aa24.14■■□□□ 1.45
PNKP-230ENST00000638016 C5P01031 1676 aa24.14■■□□□ 1.45
PNKP-230ENST00000638016 PNPLA7Q6ZV29 1317 aa24.13■■□□□ 1.45
PNKP-230ENST00000638016 QSER1Q2KHR3 1735 aa24.13■■□□□ 1.45
PNKP-230ENST00000638016 IFNL2Q8IZJ0 200 aa24.13■■□□□ 1.45
PNKP-230ENST00000638016 TAF1LQ8IZX4 1826 aa24.12■■□□□ 1.45
PNKP-230ENST00000638016 SULT6B1Q6IMI4 303 aa24.12■■□□□ 1.45
PNKP-230ENST00000638016 SGIP1Q9BQI5 828 aa24.1■■□□□ 1.45
PNKP-230ENST00000638016 MTFR1LQ9H019 292 aa24.1■■□□□ 1.45
PNKP-230ENST00000638016 TFCP2L1Q9NZI6 479 aa24.1■■□□□ 1.45
PNKP-230ENST00000638016 KDM6AO15550 1401 aaPredicted RBP24.09■■□□□ 1.45
PNKP-230ENST00000638016 KDRP35968 1356 aa24.08■■□□□ 1.45
PNKP-230ENST00000638016 ZNF530Q6P9A1 599 aaPredicted RBP24.08■■□□□ 1.45
PNKP-230ENST00000638016 ASAP1Q9ULH1 1129 aa24.08■■□□□ 1.45
PNKP-230ENST00000638016 TMOD3Q9NYL9 352 aa24.07■■□□□ 1.44
PNKP-230ENST00000638016 NPC1L1Q9UHC9 1359 aa24.06■■□□□ 1.44
PNKP-230ENST00000638016 HMOX1P09601 288 aa24.06■■□□□ 1.44
PNKP-230ENST00000638016 PLEKHO1Q53GL0 409 aaPredicted RBP24.06■■□□□ 1.44
PNKP-230ENST00000638016 COL3A1P02461 1466 aaPredicted RBP24.06■■□□□ 1.44
PNKP-230ENST00000638016 PLEKHG2Q9H7P9 1386 aa24.05■■□□□ 1.44
PNKP-230ENST00000638016 SMIM5Q71RC9 77 aa24.05■■□□□ 1.44
PNKP-230ENST00000638016 AMIGO3Q86WK7 504 aa24.05■■□□□ 1.44
PNKP-230ENST00000638016 C4BP0C0L5 1744 aa24.04■■□□□ 1.44
PNKP-230ENST00000638016 COL23A1Q86Y22 540 aaPredicted RBP24.03■■□□□ 1.44
PNKP-230ENST00000638016 SMARCC1Q92922 1105 aaPredicted RBP24.03■■□□□ 1.44
PNKP-230ENST00000638016 ATG3Q9NT62 314 aa24.03■■□□□ 1.44
PNKP-230ENST00000638016 AMOTQ4VCS5 1084 aa24.02■■□□□ 1.44
PNKP-230ENST00000638016 COL24A1Q17RW2 1714 aa24.01■■□□□ 1.43
PNKP-230ENST00000638016 LOC102724428A0A0B4J2F2 783 aa24.01■■□□□ 1.43
PNKP-230ENST00000638016 SIK1P57059 783 aa24.01■■□□□ 1.43
PNKP-230ENST00000638016 LINC00116Q8NCU8 138 aa24.01■■□□□ 1.43
PNKP-230ENST00000638016 FHDC1Q9C0D6 1143 aaPredicted RBP24.01■■□□□ 1.43
PNKP-230ENST00000638016 DIAPH1O60610 1272 aaKnown RBP24■■□□□ 1.43
PNKP-230ENST00000638016 ITPK1Q13572 414 aa24■■□□□ 1.43
PNKP-230ENST00000638016 DCAF5Q96JK2 942 aa24■■□□□ 1.43
PNKP-230ENST00000638016 UBR3Q6ZT12 1888 aa24■■□□□ 1.43
PNKP-230ENST00000638016 MSH5O43196 834 aa23.99■■□□□ 1.43
PNKP-230ENST00000638016 C1orf141Q5JVX7 400 aa23.98■■□□□ 1.43
PNKP-230ENST00000638016 MSL1Q68DK7 614 aa23.98■■□□□ 1.43
PNKP-230ENST00000638016 ARXQ96QS3 562 aa23.98■■□□□ 1.43
PNKP-230ENST00000638016 SCN11AQ9UI33 1791 aa23.98■■□□□ 1.43
PNKP-230ENST00000638016 ERVV-2B6SEH9 535 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms