RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 CEBPAP49715 358 aaPredicted RBP18.54■□□□□ 0.56
CLN3-253ENST00000636977 PEAK1Q9H792 1746 aa18.54■□□□□ 0.56
CLN3-253ENST00000636977 INTS3Q68E01 1043 aaKnown RBP18.54■□□□□ 0.56
CLN3-253ENST00000636977 DCTPP1Q9H773 170 aa18.54■□□□□ 0.56
CLN3-253ENST00000636977 MEIS3Q99687 375 aa18.54■□□□□ 0.56
CLN3-253ENST00000636977 PANK2Q9BZ23 570 aa18.54■□□□□ 0.56
CLN3-253ENST00000636977 XRCC6P12956 609 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-253ENST00000636977 TNPO1Q92973 898 aaKnown RBP18.53■□□□□ 0.56
CLN3-253ENST00000636977 HDGFP51858 240 aaKnown RBP18.53■□□□□ 0.56
CLN3-253ENST00000636977 MSH6P52701 1360 aa18.53■□□□□ 0.56
CLN3-253ENST00000636977 OVOS2A0A0J9YW53 1432 aa18.52■□□□□ 0.56
CLN3-253ENST00000636977 OVOS2Q6IE36 1432 aa18.52■□□□□ 0.56
CLN3-253ENST00000636977 ATP10DQ9P241 1426 aa18.52■□□□□ 0.56
CLN3-253ENST00000636977 NRKQ7Z2Y5 1582 aa18.52■□□□□ 0.55
CLN3-253ENST00000636977 G2E3Q7L622 706 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 CDC45O75419 566 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 CEP85Q6P2H3 762 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 MAP3K19Q56UN5 1328 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 SLC4A2P04920 1241 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 USP6P35125 1406 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 ANKRD44Q8N8A2 993 aa18.51■□□□□ 0.55
CLN3-253ENST00000636977 F6X3S4 739 aa18.5■□□□□ 0.55
CLN3-253ENST00000636977 MTHFSDQ2M296 383 aaKnown RBP18.5■□□□□ 0.55
CLN3-253ENST00000636977 PTPRUQ92729 1446 aa18.5■□□□□ 0.55
CLN3-253ENST00000636977 A0A0U1RQG5 324 aaPredicted RBP18.5■□□□□ 0.55
CLN3-253ENST00000636977 PLEKHG3A1L390 1219 aa18.5■□□□□ 0.55
CLN3-253ENST00000636977 FSD2A1L4K1 749 aa18.5■□□□□ 0.55
CLN3-253ENST00000636977 GAS2L2Q8NHY3 880 aa18.5■□□□□ 0.55
CLN3-253ENST00000636977 RIMS1Q86UR5 1692 aaKnown RBP18.5■□□□□ 0.55
CLN3-253ENST00000636977 UBR1Q8IWV7 1749 aa18.49■□□□□ 0.55
CLN3-253ENST00000636977 GOLGA6L3A6NEY3 463 aa18.49■□□□□ 0.55
CLN3-253ENST00000636977 TTC22Q5TAA0 569 aa18.49■□□□□ 0.55
CLN3-253ENST00000636977 CRB1P82279 1406 aa18.49■□□□□ 0.55
CLN3-253ENST00000636977 HSP90AA1P07900 732 aaKnown RBP18.48■□□□□ 0.55
CLN3-253ENST00000636977 L1TD1Q5T7N2 865 aaKnown RBP18.48■□□□□ 0.55
CLN3-253ENST00000636977 RTL1A6NKG5 1358 aa18.48■□□□□ 0.55
CLN3-253ENST00000636977 K7ELQ4 463 aaPredicted RBP18.48■□□□□ 0.55
CLN3-253ENST00000636977 SLC4A10Q6U841 1118 aa18.48■□□□□ 0.55
CLN3-253ENST00000636977 KIF24Q5T7B8 1368 aa18.46■□□□□ 0.55
CLN3-253ENST00000636977 RAB3GAP1Q15042 981 aa18.46■□□□□ 0.55
CLN3-253ENST00000636977 RRAGDQ9NQL2 400 aaPredicted RBP18.46■□□□□ 0.55
CLN3-253ENST00000636977 SDSP20132 328 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 NUTM2GQ5VZR2 741 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 KIAA0232Q92628 1395 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 SSFA2P28290 1259 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 FAM43AQ8N2R8 423 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 TSPYL4Q9UJ04 414 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 AMOTL2Q9Y2J4 779 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 TOPAZ1Q8N9V7 1692 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 NECTIN2Q92692 538 aa18.45■□□□□ 0.54
CLN3-253ENST00000636977 USP31Q70CQ4 1352 aa18.44■□□□□ 0.54
CLN3-253ENST00000636977 RGPD1P0DJD0 1748 aa18.44■□□□□ 0.54
CLN3-253ENST00000636977 DDX11L8A8MPP1 907 aa18.44■□□□□ 0.54
CLN3-253ENST00000636977 RPAP2Q8IXW5 612 aaPredicted RBP18.44■□□□□ 0.54
CLN3-253ENST00000636977 EYA1Q99502 592 aa18.44■□□□□ 0.54
CLN3-253ENST00000636977 SSH2Q76I76 1423 aa18.44■□□□□ 0.54
CLN3-253ENST00000636977 USP26Q9BXU7 913 aa18.43■□□□□ 0.54
CLN3-253ENST00000636977 KIF13AQ9H1H9 1805 aa18.43■□□□□ 0.54
CLN3-253ENST00000636977 PLEKHG1Q9ULL1 1385 aa18.43■□□□□ 0.54
CLN3-253ENST00000636977 PTPRCP08575 1304 aa18.43■□□□□ 0.54
CLN3-253ENST00000636977 TSHZ3Q63HK5 1081 aa18.42■□□□□ 0.54
CLN3-253ENST00000636977 NAP1L5Q96NT1 182 aaPredicted RBP18.42■□□□□ 0.54
CLN3-253ENST00000636977 NGDNQ8NEJ9 315 aaKnown RBP18.42■□□□□ 0.54
CLN3-253ENST00000636977 RTF1Q92541 710 aaKnown RBP18.42■□□□□ 0.54
CLN3-253ENST00000636977 CIZ1Q9ULV3 898 aaPredicted RBP18.42■□□□□ 0.54
CLN3-253ENST00000636977 CEP170BQ9Y4F5 1589 aaPredicted RBP18.42■□□□□ 0.54
CLN3-253ENST00000636977 NALCNQ8IZF0 1738 aa18.41■□□□□ 0.54
CLN3-253ENST00000636977 GAS2L3Q86XJ1 694 aa18.41■□□□□ 0.54
CLN3-253ENST00000636977 AK9Q5TCS8 1911 aa18.41■□□□□ 0.54
CLN3-253ENST00000636977 AMPHP49418 695 aa18.41■□□□□ 0.54
CLN3-253ENST00000636977 HSP90AA2PQ14568 343 aaPredicted RBP18.4■□□□□ 0.54
CLN3-253ENST00000636977 EXOC6BQ9Y2D4 811 aa18.39■□□□□ 0.54
CLN3-253ENST00000636977 RGPD8O14715 1765 aaPredicted RBP18.39■□□□□ 0.54
CLN3-253ENST00000636977 ARHGEF10O15013 1369 aa18.39■□□□□ 0.53
CLN3-253ENST00000636977 HAP1P54257 671 aaPredicted RBP18.38■□□□□ 0.53
CLN3-253ENST00000636977 PKP1Q13835 747 aa18.38■□□□□ 0.53
CLN3-253ENST00000636977 GBP4Q96PP9 640 aa18.38■□□□□ 0.53
CLN3-253ENST00000636977 LTV1Q96GA3 475 aaPredicted RBP18.38■□□□□ 0.53
CLN3-253ENST00000636977 FLT4P35916 1363 aa18.38■□□□□ 0.53
CLN3-253ENST00000636977 GRPEL1Q9HAV7 217 aa18.37■□□□□ 0.53
CLN3-253ENST00000636977 NLRP6P59044 892 aa18.37■□□□□ 0.53
CLN3-253ENST00000636977 SBNO1A3KN83 1393 aa18.37■□□□□ 0.53
CLN3-253ENST00000636977 IGSF1Q8N6C5 1336 aa18.36■□□□□ 0.53
CLN3-253ENST00000636977 RABEP1Q15276 862 aa18.36■□□□□ 0.53
CLN3-253ENST00000636977 EID1Q9Y6B2 187 aa18.36■□□□□ 0.53
CLN3-253ENST00000636977 KDRP35968 1356 aa18.36■□□□□ 0.53
CLN3-253ENST00000636977 TTC21AQ8NDW8 1320 aa18.35■□□□□ 0.53
CLN3-253ENST00000636977 PNMA6EA0A0J9YXQ4 647 aa18.35■□□□□ 0.53
CLN3-253ENST00000636977 MRE11P49959 708 aa18.35■□□□□ 0.53
CLN3-253ENST00000636977 FMN2Q9NZ56 1722 aa18.34■□□□□ 0.53
CLN3-253ENST00000636977 PDE1AP54750 535 aa18.34■□□□□ 0.53
CLN3-253ENST00000636977 ZGPATQ8N5A5 531 aaKnown RBP18.34■□□□□ 0.53
CLN3-253ENST00000636977 USHBP1Q8N6Y0 703 aa18.34■□□□□ 0.53
CLN3-253ENST00000636977 FKBP5Q13451 457 aaPredicted RBP18.33■□□□□ 0.53
CLN3-253ENST00000636977 IL17REQ8NFR9 667 aa18.33■□□□□ 0.53
CLN3-253ENST00000636977 BAG4O95429 457 aaKnown RBP18.33■□□□□ 0.52
CLN3-253ENST00000636977 CCT4P50991 539 aaKnown RBP18.33■□□□□ 0.52
CLN3-253ENST00000636977 FLIIQ13045 1269 aa18.33■□□□□ 0.52
CLN3-253ENST00000636977 CHAMP1Q96JM3 812 aa18.33■□□□□ 0.52
CLN3-253ENST00000636977 STK31Q9BXU1 1019 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms