RNA–Protein interactions for RNA: ENST00000624009.3

LINC00963-217, long intergenic non-protein coding RNA 963, humanhuman

TSL 5 BASIC

Gene LINC00963, Length 663 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-217ENST00000624009 PKD1L3Q7Z443 1732 aa17.03■□□□□ 0.32
LINC00963-217ENST00000624009 ZCRB1Q8TBF4 217 aaKnown RBP17.02■□□□□ 0.32
LINC00963-217ENST00000624009 BTAF1O14981 1849 aa17.02■□□□□ 0.31
LINC00963-217ENST00000624009 PER1O15534 1290 aaPredicted RBP17.01■□□□□ 0.31
LINC00963-217ENST00000624009 LRP5O75197 1615 aa17■□□□□ 0.31
LINC00963-217ENST00000624009 MORC1Q86VD1 984 aa17■□□□□ 0.31
LINC00963-217ENST00000624009 PPM1GO15355 546 aaPredicted RBP16.99■□□□□ 0.31
LINC00963-217ENST00000624009 TATP17735 454 aaPredicted RBP16.99■□□□□ 0.31
LINC00963-217ENST00000624009 NBPF14Q5TI25 921 aa16.99■□□□□ 0.31
LINC00963-217ENST00000624009 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.99■□□□□ 0.31
LINC00963-217ENST00000624009 PCDH11XQ9BZA7 1347 aa16.98■□□□□ 0.31
LINC00963-217ENST00000624009 PCDH11YQ9BZA8 1340 aa16.98■□□□□ 0.31
LINC00963-217ENST00000624009 DOT1LQ8TEK3 1739 aa16.98■□□□□ 0.31
LINC00963-217ENST00000624009 PTF1AQ7RTS3 328 aa16.96■□□□□ 0.31
LINC00963-217ENST00000624009 DDX54Q8TDD1 881 aaKnown RBP16.96■□□□□ 0.31
LINC00963-217ENST00000624009 EYA1Q99502 592 aa16.96■□□□□ 0.31
LINC00963-217ENST00000624009 IGSF1Q8N6C5 1336 aa16.96■□□□□ 0.3
LINC00963-217ENST00000624009 KCNQ2O43526 872 aa16.95■□□□□ 0.3
LINC00963-217ENST00000624009 TNNT2P45379 298 aaPredicted RBP16.95■□□□□ 0.3
LINC00963-217ENST00000624009 EIF4A2Q14240 407 aaKnown RBP16.95■□□□□ 0.3
LINC00963-217ENST00000624009 USHBP1Q8N6Y0 703 aa16.95■□□□□ 0.3
LINC00963-217ENST00000624009 LY75O60449 1722 aa16.94■□□□□ 0.3
LINC00963-217ENST00000624009 PROM2Q8N271 834 aa16.94■□□□□ 0.3
LINC00963-217ENST00000624009 HMGB2P26583 209 aaKnown RBP16.93■□□□□ 0.3
LINC00963-217ENST00000624009 TXNRD1Q16881 649 aa16.93■□□□□ 0.3
LINC00963-217ENST00000624009 SPG7Q9UQ90 795 aa16.93■□□□□ 0.3
LINC00963-217ENST00000624009 ITGB4P16144 1822 aa16.93■□□□□ 0.3
LINC00963-217ENST00000624009 R3HDM1Q15032 1099 aaKnown RBP16.92■□□□□ 0.3
LINC00963-217ENST00000624009 NKX1-1Q15270 411 aaPredicted RBP16.92■□□□□ 0.3
LINC00963-217ENST00000624009 ACSBG1Q96GR2 724 aa16.92■□□□□ 0.3
LINC00963-217ENST00000624009 SLC27A3Q5K4L6 730 aa16.91■□□□□ 0.3
LINC00963-217ENST00000624009 PAPPAQ13219 1627 aa16.91■□□□□ 0.3
LINC00963-217ENST00000624009 KDRP35968 1356 aa16.9■□□□□ 0.3
LINC00963-217ENST00000624009 PSDA5PKW4 1024 aaPredicted RBP16.9■□□□□ 0.3
LINC00963-217ENST00000624009 CYP27B1O15528 508 aa16.9■□□□□ 0.3
LINC00963-217ENST00000624009 QSER1Q2KHR3 1735 aa16.9■□□□□ 0.3
LINC00963-217ENST00000624009 PRIM1P49642 420 aaKnown RBP16.89■□□□□ 0.29
LINC00963-217ENST00000624009 TOGARAM1Q9Y4F4 1720 aa16.88■□□□□ 0.29
LINC00963-217ENST00000624009 CASZ1Q86V15 1759 aa16.88■□□□□ 0.29
LINC00963-217ENST00000624009 IL13P35225 146 aa16.87■□□□□ 0.29
LINC00963-217ENST00000624009 AMOTQ4VCS5 1084 aa16.87■□□□□ 0.29
LINC00963-217ENST00000624009 MTHFSP49914 203 aa16.86■□□□□ 0.29
LINC00963-217ENST00000624009 CC2D1BQ5T0F9 858 aaKnown RBP16.86■□□□□ 0.29
LINC00963-217ENST00000624009 IFNL2Q8IZJ0 200 aa16.86■□□□□ 0.29
LINC00963-217ENST00000624009 ANO8Q9HCE9 1232 aaPredicted RBP16.86■□□□□ 0.29
LINC00963-217ENST00000624009 STK32BQ9NY57 414 aa16.86■□□□□ 0.29
LINC00963-217ENST00000624009 SLC15A2Q16348 729 aa16.85■□□□□ 0.29
LINC00963-217ENST00000624009 SYTL4Q96C24 671 aaPredicted RBP16.85■□□□□ 0.29
LINC00963-217ENST00000624009 TAF1LQ8IZX4 1826 aa16.84■□□□□ 0.29
LINC00963-217ENST00000624009 HSP90AB1P08238 724 aaKnown RBP16.84■□□□□ 0.29
LINC00963-217ENST00000624009 PHKG2P15735 406 aa16.84■□□□□ 0.29
LINC00963-217ENST00000624009 PLEKHO1Q53GL0 409 aaPredicted RBP16.84■□□□□ 0.29
LINC00963-217ENST00000624009 SMARCC1Q92922 1105 aaPredicted RBP16.83■□□□□ 0.28
LINC00963-217ENST00000624009 COL3A1P02461 1466 aaPredicted RBP16.82■□□□□ 0.28
LINC00963-217ENST00000624009 DIAPH1O60610 1272 aaKnown RBP16.81■□□□□ 0.28
LINC00963-217ENST00000624009 DCAF5Q96JK2 942 aa16.81■□□□□ 0.28
LINC00963-217ENST00000624009 LRRC4BQ9NT99 713 aa16.81■□□□□ 0.28
LINC00963-217ENST00000624009 ZNF831Q5JPB2 1677 aa16.81■□□□□ 0.28
LINC00963-217ENST00000624009 VIRMAQ69YN4 1812 aaKnown RBP16.8■□□□□ 0.28
LINC00963-217ENST00000624009 SCN11AQ9UI33 1791 aa16.8■□□□□ 0.28
LINC00963-217ENST00000624009 ERVV-2B6SEH9 535 aa16.8■□□□□ 0.28
LINC00963-217ENST00000624009 SULT6B1Q6IMI4 303 aa16.8■□□□□ 0.28
LINC00963-217ENST00000624009 SPON1Q9HCB6 807 aa16.8■□□□□ 0.28
LINC00963-217ENST00000624009 C5P01031 1676 aa16.8■□□□□ 0.28
LINC00963-217ENST00000624009 MPRIPQ6WCQ1 1025 aa16.79■□□□□ 0.28
LINC00963-217ENST00000624009 AKT1S1Q96B36 256 aa16.79■□□□□ 0.28
LINC00963-217ENST00000624009 TUBGCP6Q96RT7 1819 aa16.79■□□□□ 0.28
LINC00963-217ENST00000624009 PALLDQ8WX93 1383 aa16.78■□□□□ 0.28
LINC00963-217ENST00000624009 AEBP1Q8IUX7 1158 aa16.78■□□□□ 0.28
LINC00963-217ENST00000624009 PIGBQ92521 554 aa16.78■□□□□ 0.28
LINC00963-217ENST00000624009 TMOD3Q9NYL9 352 aa16.78■□□□□ 0.28
LINC00963-217ENST00000624009 CCNL1Q9UK58 526 aaPredicted RBP16.78■□□□□ 0.28
LINC00963-217ENST00000624009 COL24A1Q17RW2 1714 aa16.78■□□□□ 0.28
LINC00963-217ENST00000624009 ZNF530Q6P9A1 599 aaPredicted RBP16.77■□□□□ 0.28
LINC00963-217ENST00000624009 C1orf141Q5JVX7 400 aa16.76■□□□□ 0.27
LINC00963-217ENST00000624009 SLC16A10Q8TF71 515 aa16.76■□□□□ 0.27
LINC00963-217ENST00000624009 CFAP53Q96M91 514 aa16.76■□□□□ 0.27
LINC00963-217ENST00000624009 ADAMTS7Q9UKP4 1686 aa16.75■□□□□ 0.27
LINC00963-217ENST00000624009 ZEB1P37275 1124 aaPredicted RBP16.75■□□□□ 0.27
LINC00963-217ENST00000624009 ZNF827Q17R98 1081 aa16.75■□□□□ 0.27
LINC00963-217ENST00000624009 MTFR1LQ9H019 292 aa16.75■□□□□ 0.27
LINC00963-217ENST00000624009 KDM6AO15550 1401 aaPredicted RBP16.75■□□□□ 0.27
LINC00963-217ENST00000624009 AKAP4Q5JQC9 854 aa16.74■□□□□ 0.27
LINC00963-217ENST00000624009 PPP2R1AP30153 589 aa16.73■□□□□ 0.27
LINC00963-217ENST00000624009 UBR3Q6ZT12 1888 aa16.73■□□□□ 0.27
LINC00963-217ENST00000624009 C4BP0C0L5 1744 aa16.73■□□□□ 0.27
LINC00963-217ENST00000624009 CICQ96RK0 1608 aaPredicted RBP16.72■□□□□ 0.27
LINC00963-217ENST00000624009 FLAD1Q8NFF5 587 aa16.72■□□□□ 0.27
LINC00963-217ENST00000624009 TFCP2L1Q9NZI6 479 aa16.72■□□□□ 0.27
LINC00963-217ENST00000624009 NUDCQ9Y266 331 aa16.72■□□□□ 0.27
LINC00963-217ENST00000624009 MRC1P22897 1456 aa16.72■□□□□ 0.27
LINC00963-217ENST00000624009 LOC102724428A0A0B4J2F2 783 aa16.71■□□□□ 0.27
LINC00963-217ENST00000624009 SIK1P57059 783 aa16.71■□□□□ 0.27
LINC00963-217ENST00000624009 PNPLA7Q6ZV29 1317 aa16.7■□□□□ 0.26
LINC00963-217ENST00000624009 HMOX1P09601 288 aa16.7■□□□□ 0.26
LINC00963-217ENST00000624009 CABP4P57796 275 aa16.7■□□□□ 0.26
LINC00963-217ENST00000624009 SGIP1Q9BQI5 828 aa16.7■□□□□ 0.26
LINC00963-217ENST00000624009 PDGFDQ9GZP0 370 aaPredicted RBP16.7■□□□□ 0.26
LINC00963-217ENST00000624009 ATG3Q9NT62 314 aa16.7■□□□□ 0.26
LINC00963-217ENST00000624009 PTGER2P43116 358 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms