RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 ALDH1L2Q3SY69 923 aa12.64□□□□□ -0.39
VTA1-205ENST00000620996 CADPS2Q86UW7 1296 aa12.63□□□□□ -0.39
VTA1-205ENST00000620996 PCDHB15Q9Y5E8 787 aa12.63□□□□□ -0.39
VTA1-205ENST00000620996 MSH6P52701 1360 aa12.63□□□□□ -0.39
VTA1-205ENST00000620996 NBPF6Q5VWK0 638 aa12.63□□□□□ -0.39
VTA1-205ENST00000620996 CABLES1Q8TDN4 633 aa12.63□□□□□ -0.39
VTA1-205ENST00000620996 NBPF4Q96M43 638 aa12.63□□□□□ -0.39
VTA1-205ENST00000620996 PDE4AP27815 886 aa12.62□□□□□ -0.39
VTA1-205ENST00000620996 DDX19BQ9UMR2 479 aa12.62□□□□□ -0.39
VTA1-205ENST00000620996 DLG5Q8TDM6 1919 aa12.62□□□□□ -0.39
VTA1-205ENST00000620996 NWD1Q149M9 1564 aa12.62□□□□□ -0.39
VTA1-205ENST00000620996 GNAT3A8MTJ3 354 aa12.62□□□□□ -0.39
VTA1-205ENST00000620996 NECTIN2Q92692 538 aa12.62□□□□□ -0.39
VTA1-205ENST00000620996 MRPL50Q8N5N7 158 aaKnown RBP12.61□□□□□ -0.39
VTA1-205ENST00000620996 ANKRD24Q8TF21 1146 aa12.61□□□□□ -0.39
VTA1-205ENST00000620996 RWDD1Q9H446 243 aaPredicted RBP12.61□□□□□ -0.39
VTA1-205ENST00000620996 ZNF335Q9H4Z2 1342 aaPredicted RBP12.61□□□□□ -0.39
VTA1-205ENST00000620996 CSB-PGBD3P0DP91 1061 aa12.61□□□□□ -0.39
VTA1-205ENST00000620996 HAP1P54257 671 aaPredicted RBP12.6□□□□□ -0.39
VTA1-205ENST00000620996 RTL1A6NKG5 1358 aa12.6□□□□□ -0.39
VTA1-205ENST00000620996 CHL1O00533 1208 aa12.6□□□□□ -0.39
VTA1-205ENST00000620996 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
VTA1-205ENST00000620996 PODXL2Q9NZ53 605 aa12.6□□□□□ -0.39
VTA1-205ENST00000620996 KDRP35968 1356 aa12.6□□□□□ -0.39
VTA1-205ENST00000620996 KIF24Q5T7B8 1368 aa12.6□□□□□ -0.39
VTA1-205ENST00000620996 ANP32AP39687 249 aaKnown RBP12.59□□□□□ -0.39
VTA1-205ENST00000620996 C1orf115Q9H7X2 142 aa12.59□□□□□ -0.39
VTA1-205ENST00000620996 ARHGEF25Q86VW2 580 aa12.59□□□□□ -0.39
VTA1-205ENST00000620996 NPHP3Q7Z494 1330 aa12.59□□□□□ -0.39
VTA1-205ENST00000620996 CHRNA2Q15822 529 aa12.59□□□□□ -0.39
VTA1-205ENST00000620996 ZNF530Q6P9A1 599 aaPredicted RBP12.59□□□□□ -0.39
VTA1-205ENST00000620996 NLRP2Q9NX02 1062 aa12.59□□□□□ -0.39
VTA1-205ENST00000620996 MST1RQ04912 1400 aa12.59□□□□□ -0.39
VTA1-205ENST00000620996 AXIN2Q9Y2T1 843 aa12.58□□□□□ -0.4
VTA1-205ENST00000620996 MAP3K5Q99683 1374 aa12.58□□□□□ -0.4
VTA1-205ENST00000620996 LTN1O94822 1766 aa12.58□□□□□ -0.4
VTA1-205ENST00000620996 RGPD1P0DJD0 1748 aa12.57□□□□□ -0.4
VTA1-205ENST00000620996 MARF1Q9Y4F3 1742 aaKnown RBP12.57□□□□□ -0.4
VTA1-205ENST00000620996 NFAT5O94916 1531 aa12.57□□□□□ -0.4
VTA1-205ENST00000620996 SLC4A2P04920 1241 aa12.57□□□□□ -0.4
VTA1-205ENST00000620996 API5Q9BZZ5 524 aaKnown RBP12.57□□□□□ -0.4
VTA1-205ENST00000620996 AAMPQ13685 434 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 C1orf141Q5JVX7 400 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 SLC4A10Q6U841 1118 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 MPRIPQ6WCQ1 1025 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 IL17REQ8NFR9 667 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 CRB1P82279 1406 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 PLEKHO1Q53GL0 409 aaPredicted RBP12.56□□□□□ -0.4
VTA1-205ENST00000620996 BACH2Q9BYV9 841 aa12.56□□□□□ -0.4
VTA1-205ENST00000620996 STRCP1A6NGW2 1772 aa12.55□□□□□ -0.4
VTA1-205ENST00000620996 LMTK3Q96Q04 1460 aa12.55□□□□□ -0.4
VTA1-205ENST00000620996 TEFQ10587 303 aa12.55□□□□□ -0.4
VTA1-205ENST00000620996 STK31Q9BXU1 1019 aa12.55□□□□□ -0.4
VTA1-205ENST00000620996 PDZRN3Q9UPQ7 1066 aa12.55□□□□□ -0.4
VTA1-205ENST00000620996 LGR6Q9HBX8 967 aa12.55□□□□□ -0.4
VTA1-205ENST00000620996 TAF7Q15545 349 aaPredicted RBP12.54□□□□□ -0.4
VTA1-205ENST00000620996 USP19O94966 1318 aa12.54□□□□□ -0.4
VTA1-205ENST00000620996 BRINP3Q76B58 766 aa12.54□□□□□ -0.4
VTA1-205ENST00000620996 HTATSF1O43719 755 aaKnown RBP12.53□□□□□ -0.4
VTA1-205ENST00000620996 EIF2S2P20042 333 aaKnown RBP12.53□□□□□ -0.4
VTA1-205ENST00000620996 RAPGEF4Q8WZA2 1011 aa12.53□□□□□ -0.4
VTA1-205ENST00000620996 ZBTB40Q9NUA8 1239 aa12.53□□□□□ -0.4
VTA1-205ENST00000620996 SLAIN2Q9P270 581 aa12.53□□□□□ -0.4
VTA1-205ENST00000620996 KIF1AQ12756 1690 aa12.53□□□□□ -0.4
VTA1-205ENST00000620996 ARHGAP45Q92619 1136 aa12.53□□□□□ -0.4
VTA1-205ENST00000620996 FAM161AQ3B820 660 aa12.52□□□□□ -0.4
VTA1-205ENST00000620996 CHMP4BQ9H444 224 aaKnown RBP12.52□□□□□ -0.41
VTA1-205ENST00000620996 KIAA0232Q92628 1395 aa12.52□□□□□ -0.41
VTA1-205ENST00000620996 DCCP43146 1447 aa12.52□□□□□ -0.41
VTA1-205ENST00000620996 F6X3S4 739 aa12.51□□□□□ -0.41
VTA1-205ENST00000620996 BRPF1P55201 1214 aaPredicted RBP12.51□□□□□ -0.41
VTA1-205ENST00000620996 G2E3Q7L622 706 aa12.51□□□□□ -0.41
VTA1-205ENST00000620996 FKBP5Q13451 457 aaPredicted RBP12.51□□□□□ -0.41
VTA1-205ENST00000620996 TNS3Q68CZ2 1445 aa12.51□□□□□ -0.41
VTA1-205ENST00000620996 ERBB3P21860 1342 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 BTBD11A6QL63 1104 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 AMOTQ4VCS5 1084 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 PRDM11Q9NQV5 511 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 ABCC4O15439 1325 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 ZBTB7BO15156 539 aaPredicted RBP12.5□□□□□ -0.41
VTA1-205ENST00000620996 AKAP4Q5JQC9 854 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 USP54Q70EL1 1684 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 SPATA31A3Q5VYP0 1347 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 HDGFL1Q5TGJ6 251 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 CCDC30Q5VVM6 783 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 SLIT3O75094 1523 aa12.5□□□□□ -0.41
VTA1-205ENST00000620996 NCOA3Q9Y6Q9 1424 aa12.49□□□□□ -0.41
VTA1-205ENST00000620996 TATP17735 454 aaPredicted RBP12.49□□□□□ -0.41
VTA1-205ENST00000620996 KCNQ3O43525 872 aa12.49□□□□□ -0.41
VTA1-205ENST00000620996 LNPKQ9C0E8 428 aa12.49□□□□□ -0.41
VTA1-205ENST00000620996 TRPM3Q9HCF6 1732 aaPredicted RBP12.49□□□□□ -0.41
VTA1-205ENST00000620996 RGPD2P0DJD1 1756 aa12.49□□□□□ -0.41
VTA1-205ENST00000620996 APBB1O00213 710 aa12.49□□□□□ -0.41
VTA1-205ENST00000620996 HDAC1Q13547 482 aaPredicted RBP12.48□□□□□ -0.41
VTA1-205ENST00000620996 ANKRD45Q5TZF3 282 aa12.48□□□□□ -0.41
VTA1-205ENST00000620996 STRN4Q9NRL3 753 aa12.48□□□□□ -0.41
VTA1-205ENST00000620996 MED1Q15648 1581 aaPredicted RBP12.48□□□□□ -0.41
VTA1-205ENST00000620996 PTPRCP08575 1304 aa12.47□□□□□ -0.41
VTA1-205ENST00000620996 C8orf34Q49A92 452 aa12.47□□□□□ -0.41
VTA1-205ENST00000620996 RNMTO43148 476 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms