RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SLC24A3Q9HC58 644 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 CFAP45Q9UL16 551 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 PYCARDQ9ULZ3 195 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 SEC31AO94979 1220 aaKnown RBP5.92□□□□□ -1.46
VPS13D-214ENST00000620676 LUZP1Q86V48 1076 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 ECM2O94769 699 aaPredicted RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 GNG11P61952 73 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 GDAP1L1Q96MZ0 367 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 CRACR2AQ9BSW2 395 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 MAP2K2P36507 400 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 VPS53Q5VIR6 699 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 NUTM2FA1L443 756 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 CWC27Q6UX04 472 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 JAKMIP1Q96N16 626 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 THUMPD2Q9BTF0 503 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 ENOX2Q16206 610 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 GBP6Q6ZN66 633 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 NUTM1Q86Y26 1132 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 FEZ1Q99689 392 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 CCDC113Q9H0I3 377 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 PRM3Q9NNZ6 103 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 CPLX1O14810 134 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 CFAP100Q494V2 611 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 RNF20Q5VTR2 975 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.91□□□□□ -1.462e-6■■■■■ 55.4
VPS13D-214ENST00000620676 IPO7O95373 1038 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 MVPQ14764 893 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 NFXL1Q6ZNB6 911 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 CASTP20810 708 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 GOLGA6L7A0A1B0GV03 622 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 MLECQ14165 292 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 UTP14CQ5TAP6 766 aaKnown RBP5.91□□□□□ -1.46
VPS13D-214ENST00000620676 MIS18AQ9NYP9 233 aa5.91□□□□□ -1.46
VPS13D-214ENST00000620676 KIF2AO00139 706 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-214ENST00000620676 CCP110O43303 1012 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 RAB3GAP1Q15042 981 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 ZSCAN26Q16670 478 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 SYT10Q6XYQ8 523 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 ARFGAP3Q9NP61 516 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 PHLDB1Q86UU1 1377 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 KRT85P78386 507 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 TMCO4Q5TGY1 634 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 MTMR7Q9Y216 660 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 ANKRD62A6NC57 917 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 BIRC2Q13490 618 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 DNAJC25Q9H1X3 360 aa5.9□□□□□ -1.46
VPS13D-214ENST00000620676 OAS2P29728 719 aaKnown RBP5.9□□□□□ -1.47
VPS13D-214ENST00000620676 FSD2A1L4K1 749 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 LIG3P49916 1009 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 DCTN1Q14203 1278 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 KIF4BQ2VIQ3 1234 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 OTUD6BQ8N6M0 293 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 TRIM66O15016 1216 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 HGSO14964 777 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-214ENST00000620676 PDE3AQ14432 1141 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 KLHL10Q6JEL2 608 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 RAB11FIP4Q86YS3 637 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 NAA30Q147X3 362 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-214ENST00000620676 HSP90AB2PQ58FF8 381 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 CYP46A1Q9Y6A2 500 aa5.9□□□□□ -1.47
VPS13D-214ENST00000620676 FMN1Q68DA7 1419 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 SLU7O95391 586 aaKnown RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CCDC69A6NI79 296 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CCDC181Q5TID7 509 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 FHAD1B1AJZ9 1412 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 PLEKHD1A6NEE1 506 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 TERF1P54274 439 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CLASRPQ8N2M8 674 aaKnown RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 HYPKQ9NX55 129 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 TPX2Q9ULW0 747 aaKnown RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 LONRF3Q496Y0 759 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 C16orf71Q8IYS4 520 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 HNRNPMP52272 730 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 HS1BP3Q53T59 392 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 HNRNPH2P55795 449 aaKnown RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 GABPB1Q06547 395 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 TRIM29Q14134 588 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 MAATS1Q7Z4T9 603 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CAPZA3Q96KX2 299 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 RLBP1P12271 317 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 MICALCLQ6ZW33 695 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CEP57L1Q8IYX8 460 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CCDC114Q96M63 670 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 GOPCQ9HD26 462 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 KIF5CO60282 957 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 GCKP35557 465 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 MCM2P49736 904 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 LZTFL1Q9NQ48 299 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 RARSP54136 660 aaKnown RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CCDC18Q5T9S5 1454 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 KIAA1328Q86T90 577 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 CCAR1Q8IX12 1150 aaKnown RBP5.89□□□□□ -1.47
VPS13D-214ENST00000620676 SSH1Q8WYL5 1049 aa5.89□□□□□ -1.47
VPS13D-214ENST00000620676 PRPF40BQ6NWY9 871 aaKnown RBP5.88□□□□□ -1.47
VPS13D-214ENST00000620676 GPIHBP1Q8IV16 184 aa5.88□□□□□ -1.47
VPS13D-214ENST00000620676 EIF4E1BA6NMX2 242 aaKnown RBP5.88□□□□□ -1.47
VPS13D-214ENST00000620676 IL1RAPL2Q9NP60 686 aa5.88□□□□□ -1.47
VPS13D-214ENST00000620676 TYRO3Q06418 890 aa5.88□□□□□ -1.47
VPS13D-214ENST00000620676 TOP1P11387 765 aaKnown RBP5.88□□□□□ -1.47
VPS13D-214ENST00000620676 MRFAP1Q9Y605 127 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms