RNA–Protein interactions for RNA: ENST00000602723.5

CSMD1-217, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-217ENST00000602723 DDX11Q96FC9 970 aa11.25□□□□□ -0.61
CSMD1-217ENST00000602723 HECW1Q76N89 1606 aa11.25□□□□□ -0.61
CSMD1-217ENST00000602723 SETD1BQ9UPS6 1966 aaKnown RBP11.25□□□□□ -0.61
CSMD1-217ENST00000602723 KLHL34Q8N239 644 aa11.25□□□□□ -0.61
CSMD1-217ENST00000602723 PRDM10Q9NQV6 1147 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 KRT32Q14532 448 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 GPRASP1Q5JY77 1395 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 BCAR3O75815 825 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 CAMK4Q16566 473 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 UBAC1Q9BSL1 405 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 NCOA2Q15596 1464 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 CASQ1P31415 396 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 NLRP6P59044 892 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 KIF5CO60282 957 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 CCDC183Q5T5S1 534 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 SOGA3Q5TF21 947 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 WASF1Q92558 559 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 GAPVD1Q14C86 1478 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 ZSCAN12O43309 604 aa11.24□□□□□ -0.61
CSMD1-217ENST00000602723 ABTB2Q8N961 1025 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 FANCD2Q9BXW9 1451 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 SPA17Q15506 151 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 CWC27Q6UX04 472 aaKnown RBP11.23□□□□□ -0.61
CSMD1-217ENST00000602723 CCDC57Q2TAC2 916 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 PLEKHO1Q53GL0 409 aaPredicted RBP11.23□□□□□ -0.61
CSMD1-217ENST00000602723 ATF7IPQ6VMQ6 1270 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 TDO2P48775 406 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 MAP2K1Q02750 393 aaPredicted RBP11.23□□□□□ -0.61
CSMD1-217ENST00000602723 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.23□□□□□ -0.61
CSMD1-217ENST00000602723 CTNNA3Q9UI47 895 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 CADPSQ9ULU8 1353 aa11.23□□□□□ -0.61
CSMD1-217ENST00000602723 FAM177BA6PVY3 158 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 MATR3P43243 847 aaKnown RBP eCLIP11.22□□□□□ -0.61
CSMD1-217ENST00000602723 ZSCAN25Q6NSZ9 544 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 CALCOCO1Q9P1Z2 691 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 CEP131Q9UPN4 1083 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 FKBP4Q02790 459 aaKnown RBP eCLIP11.22□□□□□ -0.61
CSMD1-217ENST00000602723 LUZP1Q86V48 1076 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 FAM107BQ9H098 131 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 CGNQ9P2M7 1197 aaKnown RBP11.22□□□□□ -0.61
CSMD1-217ENST00000602723 PPP1R12BO60237 982 aaPredicted RBP11.22□□□□□ -0.61
CSMD1-217ENST00000602723 POLA1P09884 1462 aaPredicted RBP11.22□□□□□ -0.61
CSMD1-217ENST00000602723 WDR63Q8IWG1 891 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 CCDC113Q9H0I3 377 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 EHBP1L1Q8N3D4 1523 aa11.22□□□□□ -0.61
CSMD1-217ENST00000602723 IFFO1Q0D2I5 559 aa11.21□□□□□ -0.61
CSMD1-217ENST00000602723 MPHOSPH8Q99549 860 aa11.21□□□□□ -0.61
CSMD1-217ENST00000602723 POTEJP0CG39 1038 aa11.21□□□□□ -0.61
CSMD1-217ENST00000602723 PLEKHH1Q9ULM0 1364 aa11.21□□□□□ -0.61
CSMD1-217ENST00000602723 PLEKHH2Q8IVE3 1493 aa11.21□□□□□ -0.61
CSMD1-217ENST00000602723 TMEM132EQ6IEE7 984 aa11.21□□□□□ -0.61
CSMD1-217ENST00000602723 CBX1P83916 185 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 VPS36Q86VN1 386 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 NF2P35240 595 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 RAI14Q9P0K7 980 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 ERBINQ96RT1 1412 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 SRGAP3O43295 1099 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 FGD5Q6ZNL6 1462 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 CASKIN1Q8WXD9 1431 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 CLIP2Q9UDT6 1046 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 CETN2P41208 172 aa11.2□□□□□ -0.62
CSMD1-217ENST00000602723 POLR3GO15318 223 aaPredicted RBP11.19□□□□□ -0.62
CSMD1-217ENST00000602723 MICALCLQ6ZW33 695 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 ANAPC15P60006 121 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 RNF187Q5TA31 235 aaPredicted RBP11.19□□□□□ -0.62
CSMD1-217ENST00000602723 NEBLO76041 1014 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 CEP63Q96MT8 703 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 GOPCQ9HD26 462 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 TICAM2Q86XR7 235 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 C16orf45Q96MC5 204 aaPredicted RBP11.19□□□□□ -0.62
CSMD1-217ENST00000602723 U3KPZ7 1027 aaPredicted RBP11.19□□□□□ -0.62
CSMD1-217ENST00000602723 TOP1P11387 765 aaKnown RBP11.19□□□□□ -0.62
CSMD1-217ENST00000602723 IBSPP21815 317 aaPredicted RBP11.19□□□□□ -0.62
CSMD1-217ENST00000602723 GSTTP1A0A1W2PQM5 241 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 KLHL10Q6JEL2 608 aa11.19□□□□□ -0.62
CSMD1-217ENST00000602723 SCAND2PQ9GZW5 306 aaPredicted RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 TRIM21P19474 475 aaKnown RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 XPCQ01831 940 aaPredicted RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 FKBP15Q5T1M5 1219 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 ZNF644Q9H582 1327 aaPredicted RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 PIBF1Q8WXW3 757 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 ZNF428Q96B54 188 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 CCDC178Q5BJE1 867 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 ANO10Q9NW15 660 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 SEC63Q9UGP8 760 aaKnown RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 ZNF76P36508 570 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 SMC1AQ14683 1233 aaKnown RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 STAMBPO95630 424 aa11.18□□□□□ -0.62
CSMD1-217ENST00000602723 RBM42Q9BTD8 480 aaKnown RBP11.18□□□□□ -0.62
CSMD1-217ENST00000602723 SH2B1Q9NRF2 756 aaPredicted RBP11.17□□□□□ -0.62
CSMD1-217ENST00000602723 SULT6B1Q6IMI4 303 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 NUP88Q99567 741 aaPredicted RBP11.17□□□□□ -0.62
CSMD1-217ENST00000602723 C9orf84Q5VXU9 1444 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 POTEB2H3BUK9 544 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 CCDC175P0C221 793 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 MYL6BP14649 208 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 CTR9Q6PD62 1173 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 CFTRP13569 1480 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 GCOM1H8Y6P7 765 aaPredicted RBP11.17□□□□□ -0.62
CSMD1-217ENST00000602723 MYZAPP0CAP1 466 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms