RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MTHFSP49914 203 aa26.16■■□□□ 1.78
UPF1-212ENST00000601689 SPG7Q9UQ90 795 aa26.15■■□□□ 1.78
UPF1-212ENST00000601689 MEGF6O75095 1541 aa26.14■■□□□ 1.77
UPF1-212ENST00000601689 PCDH11XQ9BZA7 1347 aa26.14■■□□□ 1.77
UPF1-212ENST00000601689 PCDH11YQ9BZA8 1340 aa26.14■■□□□ 1.77
UPF1-212ENST00000601689 ACSBG1Q96GR2 724 aa26.11■■□□□ 1.77
UPF1-212ENST00000601689 CFAP53Q96M91 514 aa26.11■■□□□ 1.77
UPF1-212ENST00000601689 PLSCR1O15162 318 aa26.1■■□□□ 1.77
UPF1-212ENST00000601689 EZH2Q15910 746 aaKnown RBP26.1■■□□□ 1.77
UPF1-212ENST00000601689 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.1■■□□□ 1.771e-6■□□□□ 9.6
UPF1-212ENST00000601689 IGSF1Q8N6C5 1336 aa26.1■■□□□ 1.77
UPF1-212ENST00000601689 CAMKK2Q96RR4 588 aa26.09■■□□□ 1.77
UPF1-212ENST00000601689 PLEKHG2Q9H7P9 1386 aa26.08■■□□□ 1.77
UPF1-212ENST00000601689 NCAPD2Q15021 1401 aa26.08■■□□□ 1.77
UPF1-212ENST00000601689 DIAPH1O60610 1272 aaKnown RBP26.08■■□□□ 1.77
UPF1-212ENST00000601689 SYTL4Q96C24 671 aaPredicted RBP26.08■■□□□ 1.77
UPF1-212ENST00000601689 NBPF14Q5TI25 921 aa26.07■■□□□ 1.76
UPF1-212ENST00000601689 NHSQ6T4R5 1651 aa26.06■■□□□ 1.76
UPF1-212ENST00000601689 IL13P35225 146 aa26.05■■□□□ 1.76
UPF1-212ENST00000601689 PLEKHO1Q53GL0 409 aaPredicted RBP26.05■■□□□ 1.76
UPF1-212ENST00000601689 KCNQ2O43526 872 aa26.04■■□□□ 1.76
UPF1-212ENST00000601689 DDX10Q13206 875 aaKnown RBP26.04■■□□□ 1.76
UPF1-212ENST00000601689 AMOTQ4VCS5 1084 aa26.04■■□□□ 1.76
UPF1-212ENST00000601689 SULT6B1Q6IMI4 303 aa26.04■■□□□ 1.76
UPF1-212ENST00000601689 RGPD3A6NKT7 1758 aaPredicted RBP26.04■■□□□ 1.76
UPF1-212ENST00000601689 RGPD4Q7Z3J3 1758 aa26.04■■□□□ 1.76
UPF1-212ENST00000601689 SHANK3Q9BYB0 1731 aa26.03■■□□□ 1.76
UPF1-212ENST00000601689 IFNL2Q8IZJ0 200 aa26.03■■□□□ 1.76
UPF1-212ENST00000601689 PKD1L3Q7Z443 1732 aa26.02■■□□□ 1.76
UPF1-212ENST00000601689 PRIM1P49642 420 aaKnown RBP26.01■■□□□ 1.75
UPF1-212ENST00000601689 NUDCQ9Y266 331 aa26.01■■□□□ 1.75
UPF1-212ENST00000601689 HSP90AB1P08238 724 aaKnown RBP26■■□□□ 1.75
UPF1-212ENST00000601689 HMGB2P26583 209 aaKnown RBP25.99■■□□□ 1.75
UPF1-212ENST00000601689 DOT1LQ8TEK3 1739 aa25.99■■□□□ 1.75
UPF1-212ENST00000601689 BTAF1O14981 1849 aa25.98■■□□□ 1.75
UPF1-212ENST00000601689 CYP27B1O15528 508 aa25.98■■□□□ 1.75
UPF1-212ENST00000601689 PPP2R1AP30153 589 aa25.98■■□□□ 1.75
UPF1-212ENST00000601689 C1orf141Q5JVX7 400 aa25.98■■□□□ 1.75
UPF1-212ENST00000601689 PTF1AQ7RTS3 328 aa25.98■■□□□ 1.75
UPF1-212ENST00000601689 U2SURPO15042 1029 aaKnown RBP25.97■■□□□ 1.75
UPF1-212ENST00000601689 RREB1Q92766 1687 aa25.96■■□□□ 1.75
UPF1-212ENST00000601689 TXNRD1Q16881 649 aa25.96■■□□□ 1.75
UPF1-212ENST00000601689 KDRP35968 1356 aa25.95■■□□□ 1.75
UPF1-212ENST00000601689 PHKG2P15735 406 aa25.95■■□□□ 1.74
UPF1-212ENST00000601689 NKX1-1Q15270 411 aaPredicted RBP25.95■■□□□ 1.74
UPF1-212ENST00000601689 RALBP1Q15311 655 aa25.95■■□□□ 1.74
UPF1-212ENST00000601689 ZNF530Q6P9A1 599 aaPredicted RBP25.94■■□□□ 1.74
UPF1-212ENST00000601689 AEBP1Q8IUX7 1158 aa25.94■■□□□ 1.74
UPF1-212ENST00000601689 HMOX1P09601 288 aa25.93■■□□□ 1.74
UPF1-212ENST00000601689 MPRIPQ6WCQ1 1025 aa25.93■■□□□ 1.74
UPF1-212ENST00000601689 NUP188Q5SRE5 1749 aa25.92■■□□□ 1.74
UPF1-212ENST00000601689 SLC27A3Q5K4L6 730 aa25.91■■□□□ 1.74
UPF1-212ENST00000601689 PSDA5PKW4 1024 aaPredicted RBP25.9■■□□□ 1.74
UPF1-212ENST00000601689 R3HDM1Q15032 1099 aaKnown RBP25.9■■□□□ 1.74
UPF1-212ENST00000601689 SMARCC1Q92922 1105 aaPredicted RBP25.9■■□□□ 1.74
UPF1-212ENST00000601689 DCAF5Q96JK2 942 aa25.9■■□□□ 1.74
UPF1-212ENST00000601689 TMOD3Q9NYL9 352 aa25.9■■□□□ 1.74
UPF1-212ENST00000601689 STK32BQ9NY57 414 aa25.89■■□□□ 1.74
UPF1-212ENST00000601689 ITGB4P16144 1822 aa25.88■■□□□ 1.73
UPF1-212ENST00000601689 ZNF316A6NFI3 1004 aaPredicted RBP25.87■■□□□ 1.73
UPF1-212ENST00000601689 NEFMP07197 916 aa25.87■■□□□ 1.73
UPF1-212ENST00000601689 COL3A1P02461 1466 aaPredicted RBP25.86■■□□□ 1.73
UPF1-212ENST00000601689 ERVV-2B6SEH9 535 aa25.86■■□□□ 1.73
UPF1-212ENST00000601689 AKAP4Q5JQC9 854 aa25.86■■□□□ 1.73
UPF1-212ENST00000601689 PROM2Q8N271 834 aa25.86■■□□□ 1.73
UPF1-212ENST00000601689 U2AF1L5P0DN76 240 aaPredicted RBP25.85■■□□□ 1.73
UPF1-212ENST00000601689 U2AF1Q01081 240 aaKnown RBP eCLIP25.85■■□□□ 1.73
UPF1-212ENST00000601689 CABP4P57796 275 aa25.83■■□□□ 1.73
UPF1-212ENST00000601689 GAS2L2Q8NHY3 880 aa25.83■■□□□ 1.73
UPF1-212ENST00000601689 CCNL1Q9UK58 526 aaPredicted RBP25.83■■□□□ 1.73
UPF1-212ENST00000601689 PNNQ9H307 717 aaKnown RBP25.82■■□□□ 1.72
UPF1-212ENST00000601689 PIGBQ92521 554 aa25.81■■□□□ 1.72
UPF1-212ENST00000601689 TOGARAM1Q9Y4F4 1720 aa25.8■■□□□ 1.72
UPF1-212ENST00000601689 FCHSD2O94868 740 aa25.8■■□□□ 1.72
UPF1-212ENST00000601689 SLC15A2Q16348 729 aa25.8■■□□□ 1.72
UPF1-212ENST00000601689 MYBBP1AQ9BQG0 1328 aaKnown RBP25.8■■□□□ 1.72
UPF1-212ENST00000601689 PALLDQ8WX93 1383 aa25.8■■□□□ 1.72
UPF1-212ENST00000601689 LY75O60449 1722 aa25.8■■□□□ 1.72
UPF1-212ENST00000601689 MTHFSDQ2M296 383 aaKnown RBP25.78■■□□□ 1.72
UPF1-212ENST00000601689 PRKAR2BP31323 418 aa25.77■■□□□ 1.72
UPF1-212ENST00000601689 RSPH6AQ9H0K4 717 aa25.75■■□□□ 1.71
UPF1-212ENST00000601689 ANO8Q9HCE9 1232 aaPredicted RBP25.75■■□□□ 1.71
UPF1-212ENST00000601689 LRRC4BQ9NT99 713 aa25.75■■□□□ 1.71
UPF1-212ENST00000601689 SCN11AQ9UI33 1791 aa25.74■■□□□ 1.71
UPF1-212ENST00000601689 GNAT3A8MTJ3 354 aa25.73■■□□□ 1.71
UPF1-212ENST00000601689 TFCP2L1Q9NZI6 479 aa25.73■■□□□ 1.71
UPF1-212ENST00000601689 KDM6AO15550 1401 aaPredicted RBP25.72■■□□□ 1.71
UPF1-212ENST00000601689 NFATC2IPQ8NCF5 419 aa25.72■■□□□ 1.71
UPF1-212ENST00000601689 LOC102724428A0A0B4J2F2 783 aa25.71■■□□□ 1.71
UPF1-212ENST00000601689 RNMTO43148 476 aaKnown RBP25.71■■□□□ 1.71
UPF1-212ENST00000601689 SIK1P57059 783 aa25.71■■□□□ 1.71
UPF1-212ENST00000601689 RTF1Q92541 710 aaKnown RBP25.71■■□□□ 1.71
UPF1-212ENST00000601689 PRKRIP1Q9H875 184 aaPredicted RBP25.71■■□□□ 1.71
UPF1-212ENST00000601689 ASAP1Q9ULH1 1129 aa25.71■■□□□ 1.71
UPF1-212ENST00000601689 VIRMAQ69YN4 1812 aaKnown RBP25.7■■□□□ 1.71
UPF1-212ENST00000601689 SPON1Q9HCB6 807 aa25.7■■□□□ 1.7
UPF1-212ENST00000601689 ATG3Q9NT62 314 aa25.7■■□□□ 1.7
UPF1-212ENST00000601689 MAP3K5Q99683 1374 aa25.69■■□□□ 1.7
UPF1-212ENST00000601689 ATP6V1AP38606 617 aa25.69■■□□□ 1.7
UPF1-212ENST00000601689 KCNQ4P56696 695 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms