RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 CASZ1Q86V15 1759 aa31.3■■■□□ 2.6
SSBP4-209ENST00000601357 USHBP1Q8N6Y0 703 aa31.3■■■□□ 2.6
SSBP4-209ENST00000601357 ZCRB1Q8TBF4 217 aaKnown RBP31.3■■■□□ 2.6
SSBP4-209ENST00000601357 DOT1LQ8TEK3 1739 aa31.29■■■□□ 2.6
SSBP4-209ENST00000601357 PAPPAQ13219 1627 aa31.27■■■□□ 2.6
SSBP4-209ENST00000601357 NCAPD2Q15021 1401 aa31.27■■■□□ 2.6
SSBP4-209ENST00000601357 PANK3Q9H999 370 aa31.26■■■□□ 2.59
SSBP4-209ENST00000601357 WASHC2AQ641Q2 1341 aa31.25■■■□□ 2.59
SSBP4-209ENST00000601357 RAPGEF4Q8WZA2 1011 aa31.25■■■□□ 2.59
SSBP4-209ENST00000601357 KAT6BQ8WYB5 2073 aa31.25■■■□□ 2.59
SSBP4-209ENST00000601357 POLKQ9UBT6 870 aa31.23■■■□□ 2.59
SSBP4-209ENST00000601357 NSD2O96028 1365 aa31.22■■■□□ 2.59
SSBP4-209ENST00000601357 PPM1GO15355 546 aaPredicted RBP31.21■■■□□ 2.59
SSBP4-209ENST00000601357 PKD1L3Q7Z443 1732 aa31.21■■■□□ 2.59
SSBP4-209ENST00000601357 TATP17735 454 aaPredicted RBP31.2■■■□□ 2.59
SSBP4-209ENST00000601357 SLC15A2Q16348 729 aa31.2■■■□□ 2.59
SSBP4-209ENST00000601357 PRIM1P49642 420 aaKnown RBP31.19■■■□□ 2.58
SSBP4-209ENST00000601357 PDGFDQ9GZP0 370 aaPredicted RBP31.19■■■□□ 2.58
SSBP4-209ENST00000601357 SPON1Q9HCB6 807 aa31.19■■■□□ 2.58
SSBP4-209ENST00000601357 STK32BQ9NY57 414 aa31.19■■■□□ 2.58
SSBP4-209ENST00000601357 LY75O60449 1722 aa31.18■■■□□ 2.58
SSBP4-209ENST00000601357 LRRC4BQ9NT99 713 aa31.17■■■□□ 2.58
SSBP4-209ENST00000601357 PCDH11XQ9BZA7 1347 aa31.16■■■□□ 2.58
SSBP4-209ENST00000601357 PCDH11YQ9BZA8 1340 aa31.16■■■□□ 2.58
SSBP4-209ENST00000601357 TNNT2P45379 298 aaPredicted RBP31.14■■■□□ 2.58
SSBP4-209ENST00000601357 SYTL4Q96C24 671 aaPredicted RBP31.14■■■□□ 2.58
SSBP4-209ENST00000601357 EYA1Q99502 592 aa31.13■■■□□ 2.57
SSBP4-209ENST00000601357 KIF7Q2M1P5 1343 aa31.13■■■□□ 2.57
SSBP4-209ENST00000601357 SLC27A3Q5K4L6 730 aa31.12■■■□□ 2.57
SSBP4-209ENST00000601357 TOGARAM1Q9Y4F4 1720 aa31.1■■■□□ 2.57
SSBP4-209ENST00000601357 CYP27B1O15528 508 aa31.1■■■□□ 2.57
SSBP4-209ENST00000601357 EIF4A2Q14240 407 aaKnown RBP31.09■■■□□ 2.57
SSBP4-209ENST00000601357 QSER1Q2KHR3 1735 aa31.09■■■□□ 2.57
SSBP4-209ENST00000601357 ZNF827Q17R98 1081 aa31.08■■■□□ 2.57
SSBP4-209ENST00000601357 ZBTB7AO95365 584 aa31.06■■■□□ 2.56
SSBP4-209ENST00000601357 AKT1S1Q96B36 256 aa31.06■■■□□ 2.56
SSBP4-209ENST00000601357 KNSTRNQ9Y448 316 aa31.06■■■□□ 2.56
SSBP4-209ENST00000601357 ITGB4P16144 1822 aa31.05■■■□□ 2.56
SSBP4-209ENST00000601357 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.05■■■□□ 2.56
SSBP4-209ENST00000601357 PTGER2P43116 358 aa31.04■■■□□ 2.56
SSBP4-209ENST00000601357 PLEKHG2Q9H7P9 1386 aa31.04■■■□□ 2.56
SSBP4-209ENST00000601357 NKX1-1Q15270 411 aaPredicted RBP31.03■■■□□ 2.56
SSBP4-209ENST00000601357 AMER1Q5JTC6 1135 aaPredicted RBP31.03■■■□□ 2.56
SSBP4-209ENST00000601357 MORC1Q86VD1 984 aa31.03■■■□□ 2.56
SSBP4-209ENST00000601357 PPP1R1BQ9UD71 204 aaPredicted RBP31.03■■■□□ 2.56
SSBP4-209ENST00000601357 SPG7Q9UQ90 795 aa31.03■■■□□ 2.56
SSBP4-209ENST00000601357 TUBGCP6Q96RT7 1819 aa31.03■■■□□ 2.56
SSBP4-209ENST00000601357 IGSF1Q8N6C5 1336 aa31.02■■■□□ 2.56
SSBP4-209ENST00000601357 KCNQ4P56696 695 aa31.02■■■□□ 2.56
SSBP4-209ENST00000601357 MTFR1LQ9H019 292 aa31.01■■■□□ 2.55
SSBP4-209ENST00000601357 ATF5Q9Y2D1 282 aaPredicted RBP30.99■■■□□ 2.55
SSBP4-209ENST00000601357 SGIP1Q9BQI5 828 aa30.98■■■□□ 2.55
SSBP4-209ENST00000601357 PER1O15534 1290 aaPredicted RBP30.97■■■□□ 2.55
SSBP4-209ENST00000601357 CCNL1Q9UK58 526 aaPredicted RBP30.97■■■□□ 2.55
SSBP4-209ENST00000601357 C5P01031 1676 aa30.96■■■□□ 2.55
SSBP4-209ENST00000601357 MPRIPQ6WCQ1 1025 aa30.95■■■□□ 2.55
SSBP4-209ENST00000601357 COL24A1Q17RW2 1714 aa30.95■■■□□ 2.54
SSBP4-209ENST00000601357 PNPLA7Q6ZV29 1317 aa30.95■■■□□ 2.54
SSBP4-209ENST00000601357 PALLDQ8WX93 1383 aa30.94■■■□□ 2.54
SSBP4-209ENST00000601357 PHKG2P15735 406 aa30.94■■■□□ 2.54
SSBP4-209ENST00000601357 TAF1LQ8IZX4 1826 aa30.94■■■□□ 2.54
SSBP4-209ENST00000601357 IFNL2Q8IZJ0 200 aa30.92■■■□□ 2.54
SSBP4-209ENST00000601357 PIGBQ92521 554 aa30.91■■■□□ 2.54
SSBP4-209ENST00000601357 TFCP2L1Q9NZI6 479 aa30.91■■■□□ 2.54
SSBP4-209ENST00000601357 SLC16A10Q8TF71 515 aa30.89■■■□□ 2.54
SSBP4-209ENST00000601357 SMARCC1Q92922 1105 aaPredicted RBP30.88■■■□□ 2.53
SSBP4-209ENST00000601357 IL13P35225 146 aa30.87■■■□□ 2.53
SSBP4-209ENST00000601357 KDRP35968 1356 aa30.86■■■□□ 2.53
SSBP4-209ENST00000601357 NPC1L1Q9UHC9 1359 aa30.85■■■□□ 2.53
SSBP4-209ENST00000601357 AEBP1Q8IUX7 1158 aa30.85■■■□□ 2.53
SSBP4-209ENST00000601357 C4BP0C0L5 1744 aa30.84■■■□□ 2.53
SSBP4-209ENST00000601357 FHDC1Q9C0D6 1143 aaPredicted RBP30.83■■■□□ 2.53
SSBP4-209ENST00000601357 TMOD3Q9NYL9 352 aa30.83■■■□□ 2.53
SSBP4-209ENST00000601357 HMGB2P26583 209 aaKnown RBP30.82■■■□□ 2.52
SSBP4-209ENST00000601357 MTHFSP49914 203 aa30.82■■■□□ 2.52
SSBP4-209ENST00000601357 AMOTQ4VCS5 1084 aa30.82■■■□□ 2.52
SSBP4-209ENST00000601357 PLEKHO1Q53GL0 409 aaPredicted RBP30.82■■■□□ 2.52
SSBP4-209ENST00000601357 ARXQ96QS3 562 aa30.82■■■□□ 2.52
SSBP4-209ENST00000601357 CC2D1BQ5T0F9 858 aaKnown RBP30.81■■■□□ 2.52
SSBP4-209ENST00000601357 MAP3K5Q99683 1374 aa30.8■■■□□ 2.52
SSBP4-209ENST00000601357 SULT6B1Q6IMI4 303 aa30.8■■■□□ 2.52
SSBP4-209ENST00000601357 SYT17Q9BSW7 474 aa30.8■■■□□ 2.52
SSBP4-209ENST00000601357 COL23A1Q86Y22 540 aaPredicted RBP30.79■■■□□ 2.52
SSBP4-209ENST00000601357 DCAF5Q96JK2 942 aa30.79■■■□□ 2.52
SSBP4-209ENST00000601357 ASAP1Q9ULH1 1129 aa30.79■■■□□ 2.52
SSBP4-209ENST00000601357 KDM6AO15550 1401 aaPredicted RBP30.79■■■□□ 2.52
SSBP4-209ENST00000601357 HSP90AB1P08238 724 aaKnown RBP30.78■■■□□ 2.52
SSBP4-209ENST00000601357 LOC102724428A0A0B4J2F2 783 aa30.77■■■□□ 2.52
SSBP4-209ENST00000601357 ERVV-2B6SEH9 535 aa30.77■■■□□ 2.52
SSBP4-209ENST00000601357 SIK1P57059 783 aa30.77■■■□□ 2.52
SSBP4-209ENST00000601357 ZNF530Q6P9A1 599 aaPredicted RBP30.77■■■□□ 2.52
SSBP4-209ENST00000601357 UBR3Q6ZT12 1888 aa30.77■■■□□ 2.52
SSBP4-209ENST00000601357 ZNF831Q5JPB2 1677 aa30.75■■■□□ 2.51
SSBP4-209ENST00000601357 ATG3Q9NT62 314 aa30.75■■■□□ 2.51
SSBP4-209ENST00000601357 POLD1P28340 1107 aa30.72■■■□□ 2.51
SSBP4-209ENST00000601357 FLAD1Q8NFF5 587 aa30.72■■■□□ 2.51
SSBP4-209ENST00000601357 COL3A1P02461 1466 aaPredicted RBP30.71■■■□□ 2.51
SSBP4-209ENST00000601357 UTRNP46939 3433 aa30.71■■■□□ 2.51
SSBP4-209ENST00000601357 DCAF8L1A6NGE4 600 aa30.71■■■□□ 2.51
SSBP4-209ENST00000601357 AMIGO3Q86WK7 504 aa30.71■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms