RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ANKRD44Q8N8A2 993 aa25.15■■□□□ 1.62
SHKBP1-225ENST00000600733 TNPO1Q92973 898 aaKnown RBP25.15■■□□□ 1.62
SHKBP1-225ENST00000600733 FSD2A1L4K1 749 aa25.14■■□□□ 1.62
SHKBP1-225ENST00000600733 DDX11L8A8MPP1 907 aa25.14■■□□□ 1.61
SHKBP1-225ENST00000600733 MIS18AQ9NYP9 233 aa25.14■■□□□ 1.61
SHKBP1-225ENST00000600733 RGPD1P0DJD0 1748 aa25.13■■□□□ 1.61
SHKBP1-225ENST00000600733 NALCNQ8IZF0 1738 aa25.13■■□□□ 1.61
SHKBP1-225ENST00000600733 XRCC6P12956 609 aaKnown RBP eCLIP25.13■■□□□ 1.61
SHKBP1-225ENST00000600733 OTUD7AQ8TE49 926 aaPredicted RBP25.13■■□□□ 1.61
SHKBP1-225ENST00000600733 KIAA0232Q92628 1395 aa25.13■■□□□ 1.61
SHKBP1-225ENST00000600733 HSP90AA1P07900 732 aaKnown RBP25.12■■□□□ 1.61
SHKBP1-225ENST00000600733 HAP1P54257 671 aaPredicted RBP25.12■■□□□ 1.61
SHKBP1-225ENST00000600733 CEP85Q6P2H3 762 aa25.12■■□□□ 1.61
SHKBP1-225ENST00000600733 TTC22Q5TAA0 569 aa25.12■■□□□ 1.61
SHKBP1-225ENST00000600733 FAM43AQ8N2R8 423 aa25.12■■□□□ 1.61
SHKBP1-225ENST00000600733 SLC26A8Q96RN1 970 aa25.12■■□□□ 1.61
SHKBP1-225ENST00000600733 K7ELQ4 463 aaPredicted RBP25.11■■□□□ 1.61
SHKBP1-225ENST00000600733 FOXO3O43524 673 aa25.11■■□□□ 1.61
SHKBP1-225ENST00000600733 MEIS3Q99687 375 aa25.11■■□□□ 1.61
SHKBP1-225ENST00000600733 CIZ1Q9ULV3 898 aaPredicted RBP25.11■■□□□ 1.61
SHKBP1-225ENST00000600733 CRB1P82279 1406 aa25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 APBB1O00213 710 aa25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 KIF13AQ9H1H9 1805 aa25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 RTL1A6NKG5 1358 aa25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 USP31Q70CQ4 1352 aa25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 MAP3K19Q56UN5 1328 aa25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 RPAP2Q8IXW5 612 aaPredicted RBP25.1■■□□□ 1.61
SHKBP1-225ENST00000600733 PTPRCP08575 1304 aa25.09■■□□□ 1.61
SHKBP1-225ENST00000600733 SLC4A2P04920 1241 aa25.09■■□□□ 1.61
SHKBP1-225ENST00000600733 RAB3GAP1Q15042 981 aa25.09■■□□□ 1.61
SHKBP1-225ENST00000600733 RIMS1Q86UR5 1692 aaKnown RBP25.09■■□□□ 1.61
SHKBP1-225ENST00000600733 SMARCA5O60264 1052 aaPredicted RBP25.09■■□□□ 1.61
SHKBP1-225ENST00000600733 PLEKHG1Q9ULL1 1385 aa25.09■■□□□ 1.61
SHKBP1-225ENST00000600733 PTPRUQ92729 1446 aa25.08■■□□□ 1.61
SHKBP1-225ENST00000600733 PANK2Q9BZ23 570 aa25.08■■□□□ 1.61
SHKBP1-225ENST00000600733 MTHFSDQ2M296 383 aaKnown RBP25.07■■□□□ 1.6
SHKBP1-225ENST00000600733 GAS2L2Q8NHY3 880 aa25.07■■□□□ 1.6
SHKBP1-225ENST00000600733 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.06■■□□□ 1.6
SHKBP1-225ENST00000600733 SSH2Q76I76 1423 aa25.06■■□□□ 1.6
SHKBP1-225ENST00000600733 G2E3Q7L622 706 aa25.05■■□□□ 1.6
SHKBP1-225ENST00000600733 ARHGEF10O15013 1369 aa25.04■■□□□ 1.6
SHKBP1-225ENST00000600733 GBP4Q96PP9 640 aa25.04■■□□□ 1.6
SHKBP1-225ENST00000600733 TSPYL4Q9UJ04 414 aa25.04■■□□□ 1.6
SHKBP1-225ENST00000600733 FMN2Q9NZ56 1722 aa25.04■■□□□ 1.6
SHKBP1-225ENST00000600733 F6X3S4 739 aa25.03■■□□□ 1.6
SHKBP1-225ENST00000600733 CEBPAP49715 358 aaPredicted RBP25.03■■□□□ 1.6
SHKBP1-225ENST00000600733 SDSP20132 328 aa25.03■■□□□ 1.6
SHKBP1-225ENST00000600733 SLC4A10Q6U841 1118 aa25.03■■□□□ 1.6
SHKBP1-225ENST00000600733 RTF1Q92541 710 aaKnown RBP25.03■■□□□ 1.6
SHKBP1-225ENST00000600733 USP26Q9BXU7 913 aa25.02■■□□□ 1.6
SHKBP1-225ENST00000600733 AMOTL2Q9Y2J4 779 aa25.01■■□□□ 1.59
SHKBP1-225ENST00000600733 FLT4P35916 1363 aa25.01■■□□□ 1.59
SHKBP1-225ENST00000600733 RRAGDQ9NQL2 400 aaPredicted RBP25■■□□□ 1.59
SHKBP1-225ENST00000600733 SBNO1A3KN83 1393 aa25■■□□□ 1.59
SHKBP1-225ENST00000600733 TTC21AQ8NDW8 1320 aa25■■□□□ 1.59
SHKBP1-225ENST00000600733 SSFA2P28290 1259 aa25■■□□□ 1.59
SHKBP1-225ENST00000600733 RABEP1Q15276 862 aa25■■□□□ 1.59
SHKBP1-225ENST00000600733 CEP170BQ9Y4F5 1589 aaPredicted RBP24.99■■□□□ 1.59
SHKBP1-225ENST00000600733 NGDNQ8NEJ9 315 aaKnown RBP24.99■■□□□ 1.59
SHKBP1-225ENST00000600733 EYA1Q99502 592 aa24.99■■□□□ 1.59
SHKBP1-225ENST00000600733 RGPD8O14715 1765 aaPredicted RBP24.99■■□□□ 1.59
SHKBP1-225ENST00000600733 KDRP35968 1356 aa24.98■■□□□ 1.59
SHKBP1-225ENST00000600733 AMPHP49418 695 aa24.98■■□□□ 1.59
SHKBP1-225ENST00000600733 MRE11P49959 708 aa24.98■■□□□ 1.59
SHKBP1-225ENST00000600733 AK9Q5TCS8 1911 aa24.98■■□□□ 1.59
SHKBP1-225ENST00000600733 EID1Q9Y6B2 187 aa24.97■■□□□ 1.59
SHKBP1-225ENST00000600733 EIF5BO60841 1220 aaKnown RBP24.96■■□□□ 1.59
SHKBP1-225ENST00000600733 PLPPR3Q6T4P5 718 aa24.96■■□□□ 1.59
SHKBP1-225ENST00000600733 GRPEL1Q9HAV7 217 aa24.96■■□□□ 1.59
SHKBP1-225ENST00000600733 IGSF1Q8N6C5 1336 aa24.95■■□□□ 1.59
SHKBP1-225ENST00000600733 HMMRO75330 724 aa24.95■■□□□ 1.58
SHKBP1-225ENST00000600733 CCT4P50991 539 aaKnown RBP24.95■■□□□ 1.58
SHKBP1-225ENST00000600733 CASC1Q6TDU7 716 aa24.94■■□□□ 1.58
SHKBP1-225ENST00000600733 PIK3C2AO00443 1686 aa24.93■■□□□ 1.58
SHKBP1-225ENST00000600733 DIP2AQ14689 1571 aa24.93■■□□□ 1.58
SHKBP1-225ENST00000600733 GAS2L3Q86XJ1 694 aa24.92■■□□□ 1.58
SHKBP1-225ENST00000600733 SKOR2Q2VWA4 1001 aaPredicted RBP24.92■■□□□ 1.58
SHKBP1-225ENST00000600733 NECTIN2Q92692 538 aa24.92■■□□□ 1.58
SHKBP1-225ENST00000600733 NUTM2GQ5VZR2 741 aa24.91■■□□□ 1.58
SHKBP1-225ENST00000600733 STK31Q9BXU1 1019 aa24.91■■□□□ 1.58
SHKBP1-225ENST00000600733 EXOC6BQ9Y2D4 811 aa24.91■■□□□ 1.58
SHKBP1-225ENST00000600733 PDE1AP54750 535 aa24.9■■□□□ 1.58
SHKBP1-225ENST00000600733 NLRP6P59044 892 aa24.9■■□□□ 1.58
SHKBP1-225ENST00000600733 GNAI2P04899 355 aa24.89■■□□□ 1.58
SHKBP1-225ENST00000600733 TSHZ3Q63HK5 1081 aa24.89■■□□□ 1.58
SHKBP1-225ENST00000600733 BAG4O95429 457 aaKnown RBP24.89■■□□□ 1.57
SHKBP1-225ENST00000600733 TBX22Q9Y458 520 aa24.89■■□□□ 1.57
SHKBP1-225ENST00000600733 PTMSP20962 102 aa24.88■■□□□ 1.57
SHKBP1-225ENST00000600733 FLIIQ13045 1269 aa24.88■■□□□ 1.57
SHKBP1-225ENST00000600733 FKBP5Q13451 457 aaPredicted RBP24.88■■□□□ 1.57
SHKBP1-225ENST00000600733 CLEC17AQ6ZS10 378 aa24.88■■□□□ 1.57
SHKBP1-225ENST00000600733 ISY1Q9ULR0 285 aaKnown RBP24.88■■□□□ 1.57
SHKBP1-225ENST00000600733 REC8O95072 547 aa24.88■■□□□ 1.57
SHKBP1-225ENST00000600733 OSBPL3Q9H4L5 887 aa24.87■■□□□ 1.57
SHKBP1-225ENST00000600733 GNAT3A8MTJ3 354 aa24.87■■□□□ 1.57
SHKBP1-225ENST00000600733 ERC2O15083 957 aa24.87■■□□□ 1.57
SHKBP1-225ENST00000600733 GOLGA6L22H0YM25 854 aa24.86■■□□□ 1.57
SHKBP1-225ENST00000600733 PKP1Q13835 747 aa24.86■■□□□ 1.57
SHKBP1-225ENST00000600733 LRRC37A3O60309 1634 aa24.86■■□□□ 1.57
SHKBP1-225ENST00000600733 SLIT1O75093 1534 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms