RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 SEPT12Q8IYM1 358 aa26.69■■□□□ 1.86
SHKBP1-222ENST00000600320 PARP4Q9UKK3 1724 aaKnown RBP26.69■■□□□ 1.86
SHKBP1-222ENST00000600320 ADAMTS8Q9UP79 889 aa26.69■■□□□ 1.86
SHKBP1-222ENST00000600320 LRRC37A3O60309 1634 aa26.68■■□□□ 1.86
SHKBP1-222ENST00000600320 PRKAR2BP31323 418 aa26.68■■□□□ 1.86
SHKBP1-222ENST00000600320 CDCA7Q9BWT1 371 aaPredicted RBP26.68■■□□□ 1.86
SHKBP1-222ENST00000600320 A0A0G2JS52 829 aa26.67■■□□□ 1.86
SHKBP1-222ENST00000600320 MYT1Q01538 1121 aa26.67■■□□□ 1.86
SHKBP1-222ENST00000600320 FCHSD2O94868 740 aa26.66■■□□□ 1.86
SHKBP1-222ENST00000600320 PLEKHF1Q96S99 279 aa26.64■■□□□ 1.86
SHKBP1-222ENST00000600320 PKD1L3Q7Z443 1732 aa26.64■■□□□ 1.85
SHKBP1-222ENST00000600320 TNS2Q63HR2 1409 aa26.64■■□□□ 1.85
SHKBP1-222ENST00000600320 SHANK3Q9BYB0 1731 aa26.63■■□□□ 1.85
SHKBP1-222ENST00000600320 DDB1Q16531 1140 aa26.63■■□□□ 1.85
SHKBP1-222ENST00000600320 PHACTR3Q96KR7 559 aa26.63■■□□□ 1.85
SHKBP1-222ENST00000600320 CCDC146Q8IYE0 955 aa26.62■■□□□ 1.85
SHKBP1-222ENST00000600320 ZCRB1Q8TBF4 217 aaKnown RBP26.62■■□□□ 1.85
SHKBP1-222ENST00000600320 BRWD3Q6RI45 1802 aa26.62■■□□□ 1.85
SHKBP1-222ENST00000600320 EXOC5O00471 708 aa26.61■■□□□ 1.85
SHKBP1-222ENST00000600320 FAM9BQ8IZU0 186 aa26.61■■□□□ 1.85
SHKBP1-222ENST00000600320 PLEKHG2Q9H7P9 1386 aa26.59■■□□□ 1.85
SHKBP1-222ENST00000600320 PLEKHO1Q53GL0 409 aaPredicted RBP26.59■■□□□ 1.85
SHKBP1-222ENST00000600320 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.59■■□□□ 1.85
SHKBP1-222ENST00000600320 MTHFSDQ2M296 383 aaKnown RBP26.58■■□□□ 1.85
SHKBP1-222ENST00000600320 AMOTQ4VCS5 1084 aa26.57■■□□□ 1.84
SHKBP1-222ENST00000600320 MARCH10Q8NA82 808 aaPredicted RBP26.57■■□□□ 1.84
SHKBP1-222ENST00000600320 SPG7Q9UQ90 795 aa26.57■■□□□ 1.84
SHKBP1-222ENST00000600320 CYP27B1O15528 508 aa26.56■■□□□ 1.84
SHKBP1-222ENST00000600320 DDX54Q8TDD1 881 aaKnown RBP26.56■■□□□ 1.84
SHKBP1-222ENST00000600320 PDE3BQ13370 1112 aa26.55■■□□□ 1.84
SHKBP1-222ENST00000600320 ZNF530Q6P9A1 599 aaPredicted RBP26.55■■□□□ 1.84
SHKBP1-222ENST00000600320 RUNDC1Q96C34 613 aa26.55■■□□□ 1.84
SHKBP1-222ENST00000600320 PNNQ9H307 717 aaKnown RBP26.55■■□□□ 1.84
SHKBP1-222ENST00000600320 KRT27Q7Z3Y8 459 aa26.54■■□□□ 1.84
SHKBP1-222ENST00000600320 PCDH11XQ9BZA7 1347 aa26.54■■□□□ 1.84
SHKBP1-222ENST00000600320 PCDH11YQ9BZA8 1340 aa26.54■■□□□ 1.84
SHKBP1-222ENST00000600320 FAM182BQ5T319 152 aa26.53■■□□□ 1.84
SHKBP1-222ENST00000600320 MAPK8IP3Q9UPT6 1336 aa26.53■■□□□ 1.84
SHKBP1-222ENST00000600320 PHKG2P15735 406 aa26.52■■□□□ 1.84
SHKBP1-222ENST00000600320 GAS2L2Q8NHY3 880 aa26.51■■□□□ 1.83
SHKBP1-222ENST00000600320 NEFMP07197 916 aa26.5■■□□□ 1.83
SHKBP1-222ENST00000600320 IFNL2Q8IZJ0 200 aa26.5■■□□□ 1.83
SHKBP1-222ENST00000600320 SENP3-EIF4A1A0A087X0R7 540 aa26.48■■□□□ 1.83
SHKBP1-222ENST00000600320 NFE2L2Q16236 605 aa26.48■■□□□ 1.83
SHKBP1-222ENST00000600320 APAF1O14727 1248 aa26.47■■□□□ 1.83
SHKBP1-222ENST00000600320 TMPOP42166 694 aaKnown RBP26.47■■□□□ 1.83
SHKBP1-222ENST00000600320 AKAP4Q5JQC9 854 aa26.47■■□□□ 1.83
SHKBP1-222ENST00000600320 C1orf141Q5JVX7 400 aa26.47■■□□□ 1.83
SHKBP1-222ENST00000600320 RRP7AQ9Y3A4 280 aaKnown RBP26.47■■□□□ 1.83
SHKBP1-222ENST00000600320 NKX1-1Q15270 411 aaPredicted RBP26.46■■□□□ 1.83
SHKBP1-222ENST00000600320 KDM6AO15550 1401 aaPredicted RBP26.45■■□□□ 1.82
SHKBP1-222ENST00000600320 DLG5Q8TDM6 1919 aa26.45■■□□□ 1.82
SHKBP1-222ENST00000600320 MAP3K5Q99683 1374 aa26.45■■□□□ 1.82
SHKBP1-222ENST00000600320 TOGARAM1Q9Y4F4 1720 aa26.43■■□□□ 1.82
SHKBP1-222ENST00000600320 MPRIPQ6WCQ1 1025 aa26.43■■□□□ 1.82
SHKBP1-222ENST00000600320 BCL9O00512 1426 aa26.42■■□□□ 1.82
SHKBP1-222ENST00000600320 GNAT3A8MTJ3 354 aa26.42■■□□□ 1.82
SHKBP1-222ENST00000600320 NEUROD2Q15784 382 aa26.42■■□□□ 1.82
SHKBP1-222ENST00000600320 RIPK4P57078 832 aa26.41■■□□□ 1.82
SHKBP1-222ENST00000600320 LGR6Q9HBX8 967 aa26.41■■□□□ 1.82
SHKBP1-222ENST00000600320 DOT1LQ8TEK3 1739 aa26.4■■□□□ 1.82
SHKBP1-222ENST00000600320 HSP90AB1P08238 724 aaKnown RBP26.4■■□□□ 1.82
SHKBP1-222ENST00000600320 IL17REQ8NFR9 667 aa26.4■■□□□ 1.82
SHKBP1-222ENST00000600320 ADAMTS7Q9UKP4 1686 aa26.4■■□□□ 1.82
SHKBP1-222ENST00000600320 RNMTO43148 476 aaKnown RBP26.39■■□□□ 1.82
SHKBP1-222ENST00000600320 DCTN1Q14203 1278 aa26.39■■□□□ 1.82
SHKBP1-222ENST00000600320 FAM196AQ6ZSG2 479 aa26.39■■□□□ 1.82
SHKBP1-222ENST00000600320 ACSBG1Q96GR2 724 aa26.39■■□□□ 1.82
SHKBP1-222ENST00000600320 DCAF5Q96JK2 942 aa26.39■■□□□ 1.82
SHKBP1-222ENST00000600320 SCN11AQ9UI33 1791 aa26.38■■□□□ 1.81
SHKBP1-222ENST00000600320 VIRMAQ69YN4 1812 aaKnown RBP26.37■■□□□ 1.81
SHKBP1-222ENST00000600320 MCM10Q7L590 875 aa26.37■■□□□ 1.81
SHKBP1-222ENST00000600320 TRIM35Q9UPQ4 493 aa26.37■■□□□ 1.81
SHKBP1-222ENST00000600320 SBF2Q86WG5 1849 aa26.37■■□□□ 1.81
SHKBP1-222ENST00000600320 PTF1AQ7RTS3 328 aa26.36■■□□□ 1.81
SHKBP1-222ENST00000600320 THUMPD2Q9BTF0 503 aaKnown RBP26.36■■□□□ 1.81
SHKBP1-222ENST00000600320 KCNQ2O43526 872 aa26.35■■□□□ 1.81
SHKBP1-222ENST00000600320 HTATSF1O43719 755 aaKnown RBP26.35■■□□□ 1.81
SHKBP1-222ENST00000600320 PRIM1P49642 420 aaKnown RBP26.35■■□□□ 1.81
SHKBP1-222ENST00000600320 CEMIPQ8WUJ3 1361 aa26.34■■□□□ 1.81
SHKBP1-222ENST00000600320 RTF1Q92541 710 aaKnown RBP26.34■■□□□ 1.81
SHKBP1-222ENST00000600320 SALL2Q9Y467 1007 aaPredicted RBP26.34■■□□□ 1.81
SHKBP1-222ENST00000600320 NHSQ6T4R5 1651 aa26.34■■□□□ 1.81
SHKBP1-222ENST00000600320 ITGB4P16144 1822 aa26.32■■□□□ 1.8
SHKBP1-222ENST00000600320 MRC1P22897 1456 aa26.32■■□□□ 1.8
SHKBP1-222ENST00000600320 TRIM37O94972 964 aa26.32■■□□□ 1.8
SHKBP1-222ENST00000600320 KAT6BQ8WYB5 2073 aa26.31■■□□□ 1.8
SHKBP1-222ENST00000600320 ERVV-2B6SEH9 535 aa26.31■■□□□ 1.8
SHKBP1-222ENST00000600320 LMOD3Q0VAK6 560 aa26.31■■□□□ 1.8
SHKBP1-222ENST00000600320 SYTL4Q96C24 671 aaPredicted RBP26.31■■□□□ 1.8
SHKBP1-222ENST00000600320 CABP4P57796 275 aa26.3■■□□□ 1.8
SHKBP1-222ENST00000600320 PIGBQ92521 554 aa26.29■■□□□ 1.8
SHKBP1-222ENST00000600320 SLC52A2Q9HAB3 445 aa26.29■■□□□ 1.8
SHKBP1-222ENST00000600320 CCDC27Q2M243 656 aa26.28■■□□□ 1.8
SHKBP1-222ENST00000600320 NCBP3Q53F19 620 aaKnown RBP26.28■■□□□ 1.8
SHKBP1-222ENST00000600320 NFATC2IPQ8NCF5 419 aa26.28■■□□□ 1.8
SHKBP1-222ENST00000600320 WWC1Q8IX03 1113 aa26.27■■□□□ 1.8
SHKBP1-222ENST00000600320 BCL11BQ9C0K0 894 aaPredicted RBP26.27■■□□□ 1.8
SHKBP1-222ENST00000600320 TMOD3Q9NYL9 352 aa26.27■■□□□ 1.8
SHKBP1-222ENST00000600320 SIPA1L3O60292 1781 aaPredicted RBP26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms