RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 MEGF6O75095 1541 aa14.41□□□□□ -0.1
CCDC9-203ENST00000596938 AMER1Q5JTC6 1135 aaPredicted RBP14.4□□□□□ -0.1
CCDC9-203ENST00000596938 KIF20BQ96Q89 1820 aa14.4□□□□□ -0.1
CCDC9-203ENST00000596938 SBF2Q86WG5 1849 aa14.39□□□□□ -0.11
CCDC9-203ENST00000596938 PER1O15534 1290 aaPredicted RBP14.39□□□□□ -0.11
CCDC9-203ENST00000596938 ANO8Q9HCE9 1232 aaPredicted RBP14.39□□□□□ -0.11
CCDC9-203ENST00000596938 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC9-203ENST00000596938 EIF4A2Q14240 407 aaKnown RBP14.38□□□□□ -0.11
CCDC9-203ENST00000596938 RREB1Q92766 1687 aa14.38□□□□□ -0.11
CCDC9-203ENST00000596938 NCAPD2Q15021 1401 aa14.38□□□□□ -0.11
CCDC9-203ENST00000596938 PCDH11XQ9BZA7 1347 aa14.38□□□□□ -0.11
CCDC9-203ENST00000596938 PCDH11YQ9BZA8 1340 aa14.38□□□□□ -0.11
CCDC9-203ENST00000596938 CYP27B1O15528 508 aa14.37□□□□□ -0.11
CCDC9-203ENST00000596938 SLC15A2Q16348 729 aa14.37□□□□□ -0.11
CCDC9-203ENST00000596938 SLC27A3Q5K4L6 730 aa14.37□□□□□ -0.11
CCDC9-203ENST00000596938 SYTL4Q96C24 671 aaPredicted RBP14.37□□□□□ -0.11
CCDC9-203ENST00000596938 STK32BQ9NY57 414 aa14.37□□□□□ -0.11
CCDC9-203ENST00000596938 SPG7Q9UQ90 795 aa14.37□□□□□ -0.11
CCDC9-203ENST00000596938 RGPD3A6NKT7 1758 aaPredicted RBP14.37□□□□□ -0.11
CCDC9-203ENST00000596938 RGPD4Q7Z3J3 1758 aa14.37□□□□□ -0.11
CCDC9-203ENST00000596938 NKX1-1Q15270 411 aaPredicted RBP14.36□□□□□ -0.11
CCDC9-203ENST00000596938 SPON1Q9HCB6 807 aa14.35□□□□□ -0.11
CCDC9-203ENST00000596938 LRRC4BQ9NT99 713 aa14.35□□□□□ -0.11
CCDC9-203ENST00000596938 NHSQ6T4R5 1651 aa14.35□□□□□ -0.11
CCDC9-203ENST00000596938 NUP188Q5SRE5 1749 aa14.35□□□□□ -0.11
CCDC9-203ENST00000596938 LRP5O75197 1615 aa14.34□□□□□ -0.11
CCDC9-203ENST00000596938 IGSF1Q8N6C5 1336 aa14.34□□□□□ -0.11
CCDC9-203ENST00000596938 PLEKHG2Q9H7P9 1386 aa14.34□□□□□ -0.11
CCDC9-203ENST00000596938 PDGFDQ9GZP0 370 aaPredicted RBP14.32□□□□□ -0.12
CCDC9-203ENST00000596938 ANKRD26Q9UPS8 1709 aa14.32□□□□□ -0.12
CCDC9-203ENST00000596938 RGPD2P0DJD1 1756 aa14.32□□□□□ -0.12
CCDC9-203ENST00000596938 HMGB2P26583 209 aaKnown RBP14.31□□□□□ -0.12
CCDC9-203ENST00000596938 IFNL2Q8IZJ0 200 aa14.31□□□□□ -0.12
CCDC9-203ENST00000596938 AKT1S1Q96B36 256 aa14.31□□□□□ -0.12
CCDC9-203ENST00000596938 NPC1L1Q9UHC9 1359 aa14.31□□□□□ -0.12
CCDC9-203ENST00000596938 PHKG2P15735 406 aa14.3□□□□□ -0.12
CCDC9-203ENST00000596938 IL13P35225 146 aa14.3□□□□□ -0.12
CCDC9-203ENST00000596938 MTHFSP49914 203 aa14.3□□□□□ -0.12
CCDC9-203ENST00000596938 MPRIPQ6WCQ1 1025 aa14.3□□□□□ -0.12
CCDC9-203ENST00000596938 MAP2P11137 1827 aaKnown RBP14.29□□□□□ -0.12
CCDC9-203ENST00000596938 AMOTQ4VCS5 1084 aa14.29□□□□□ -0.12
CCDC9-203ENST00000596938 PLEKHO1Q53GL0 409 aaPredicted RBP14.29□□□□□ -0.12
CCDC9-203ENST00000596938 CC2D1BQ5T0F9 858 aaKnown RBP14.29□□□□□ -0.12
CCDC9-203ENST00000596938 CCNL1Q9UK58 526 aaPredicted RBP14.29□□□□□ -0.12
CCDC9-203ENST00000596938 ZBTB7AO95365 584 aa14.28□□□□□ -0.12
CCDC9-203ENST00000596938 ZNF827Q17R98 1081 aa14.28□□□□□ -0.12
CCDC9-203ENST00000596938 PIGBQ92521 554 aa14.28□□□□□ -0.12
CCDC9-203ENST00000596938 SMARCC1Q92922 1105 aaPredicted RBP14.28□□□□□ -0.12
CCDC9-203ENST00000596938 MTFR1LQ9H019 292 aa14.28□□□□□ -0.12
CCDC9-203ENST00000596938 BTAF1O14981 1849 aa14.27□□□□□ -0.12
CCDC9-203ENST00000596938 SHANK3Q9BYB0 1731 aa14.27□□□□□ -0.12
CCDC9-203ENST00000596938 KCNQ4P56696 695 aa14.27□□□□□ -0.13
CCDC9-203ENST00000596938 SULT6B1Q6IMI4 303 aa14.27□□□□□ -0.13
CCDC9-203ENST00000596938 PPP1R1BQ9UD71 204 aaPredicted RBP14.27□□□□□ -0.13
CCDC9-203ENST00000596938 HSP90AB1P08238 724 aaKnown RBP14.26□□□□□ -0.13
CCDC9-203ENST00000596938 PTGER2P43116 358 aa14.26□□□□□ -0.13
CCDC9-203ENST00000596938 SLC16A10Q8TF71 515 aa14.26□□□□□ -0.13
CCDC9-203ENST00000596938 TFCP2L1Q9NZI6 479 aa14.26□□□□□ -0.13
CCDC9-203ENST00000596938 ATF5Q9Y2D1 282 aaPredicted RBP14.26□□□□□ -0.13
CCDC9-203ENST00000596938 KDRP35968 1356 aa14.25□□□□□ -0.13
CCDC9-203ENST00000596938 ERVV-2B6SEH9 535 aa14.25□□□□□ -0.13
CCDC9-203ENST00000596938 AEBP1Q8IUX7 1158 aa14.25□□□□□ -0.13
CCDC9-203ENST00000596938 DCAF5Q96JK2 942 aa14.25□□□□□ -0.13
CCDC9-203ENST00000596938 TMOD3Q9NYL9 352 aa14.25□□□□□ -0.13
CCDC9-203ENST00000596938 PALLDQ8WX93 1383 aa14.24□□□□□ -0.13
CCDC9-203ENST00000596938 DIAPH1O60610 1272 aaKnown RBP14.24□□□□□ -0.13
CCDC9-203ENST00000596938 SGIP1Q9BQI5 828 aa14.24□□□□□ -0.13
CCDC9-203ENST00000596938 PAPPAQ13219 1627 aa14.23□□□□□ -0.13
CCDC9-203ENST00000596938 PNPLA7Q6ZV29 1317 aa14.23□□□□□ -0.13
CCDC9-203ENST00000596938 ZNF530Q6P9A1 599 aaPredicted RBP14.23□□□□□ -0.13
CCDC9-203ENST00000596938 PKD1L3Q7Z443 1732 aa14.23□□□□□ -0.13
CCDC9-203ENST00000596938 DOT1LQ8TEK3 1739 aa14.22□□□□□ -0.13
CCDC9-203ENST00000596938 ASAP1Q9ULH1 1129 aa14.22□□□□□ -0.13
CCDC9-203ENST00000596938 CASZ1Q86V15 1759 aa14.22□□□□□ -0.13
CCDC9-203ENST00000596938 LOC102724428A0A0B4J2F2 783 aa14.21□□□□□ -0.13
CCDC9-203ENST00000596938 SIK1P57059 783 aa14.21□□□□□ -0.13
CCDC9-203ENST00000596938 C1orf141Q5JVX7 400 aa14.21□□□□□ -0.13
CCDC9-203ENST00000596938 ATG3Q9NT62 314 aa14.21□□□□□ -0.13
CCDC9-203ENST00000596938 KAT6BQ8WYB5 2073 aa14.21□□□□□ -0.14
CCDC9-203ENST00000596938 FLAD1Q8NFF5 587 aa14.2□□□□□ -0.14
CCDC9-203ENST00000596938 CABP4P57796 275 aa14.19□□□□□ -0.14
CCDC9-203ENST00000596938 CNGB1Q14028 1251 aaPredicted RBP14.19□□□□□ -0.14
CCDC9-203ENST00000596938 COL23A1Q86Y22 540 aaPredicted RBP14.19□□□□□ -0.14
CCDC9-203ENST00000596938 ARXQ96QS3 562 aa14.19□□□□□ -0.14
CCDC9-203ENST00000596938 HMOX1P09601 288 aa14.18□□□□□ -0.14
CCDC9-203ENST00000596938 AKAP4Q5JQC9 854 aa14.18□□□□□ -0.14
CCDC9-203ENST00000596938 LY75O60449 1722 aa14.18□□□□□ -0.14
CCDC9-203ENST00000596938 POLD1P28340 1107 aa14.17□□□□□ -0.14
CCDC9-203ENST00000596938 ATP6V1AP38606 617 aa14.17□□□□□ -0.14
CCDC9-203ENST00000596938 SYT17Q9BSW7 474 aa14.17□□□□□ -0.14
CCDC9-203ENST00000596938 KDM6AO15550 1401 aaPredicted RBP14.16□□□□□ -0.14
CCDC9-203ENST00000596938 MSH5O43196 834 aa14.16□□□□□ -0.14
CCDC9-203ENST00000596938 ITPK1Q13572 414 aa14.16□□□□□ -0.14
CCDC9-203ENST00000596938 NFATC2IPQ8NCF5 419 aa14.16□□□□□ -0.14
CCDC9-203ENST00000596938 AK7Q96M32 723 aa14.16□□□□□ -0.14
CCDC9-203ENST00000596938 CFAP53Q96M91 514 aa14.16□□□□□ -0.14
CCDC9-203ENST00000596938 FHDC1Q9C0D6 1143 aaPredicted RBP14.16□□□□□ -0.14
CCDC9-203ENST00000596938 TOGARAM1Q9Y4F4 1720 aa14.15□□□□□ -0.14
CCDC9-203ENST00000596938 DCAF8L1A6NGE4 600 aa14.15□□□□□ -0.14
CCDC9-203ENST00000596938 U2SURPO15042 1029 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms