RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 KAT6BQ8WYB5 2073 aa18.1■□□□□ 0.49
LIG1-212ENST00000596549 ITGB4P16144 1822 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 CGNL1Q0VF96 1302 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 HSP90AB2PQ58FF8 381 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 NBPF6Q5VWK0 638 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 PROM2Q8N271 834 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 USHBP1Q8N6Y0 703 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 ACSBG1Q96GR2 724 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 NBPF4Q96M43 638 aa18.09■□□□□ 0.49
LIG1-212ENST00000596549 NSD2O96028 1365 aa18.06■□□□□ 0.48
LIG1-212ENST00000596549 TXNRD1Q16881 649 aa18.04■□□□□ 0.48
LIG1-212ENST00000596549 NBPF14Q5TI25 921 aa18.04■□□□□ 0.48
LIG1-212ENST00000596549 DDX54Q8TDD1 881 aaKnown RBP18.04■□□□□ 0.48
LIG1-212ENST00000596549 C5P01031 1676 aa18.03■□□□□ 0.48
LIG1-212ENST00000596549 TAF1LQ8IZX4 1826 aa18.03■□□□□ 0.48
LIG1-212ENST00000596549 PANK3Q9H999 370 aa18.03■□□□□ 0.48
LIG1-212ENST00000596549 POLKQ9UBT6 870 aa18.02■□□□□ 0.48
LIG1-212ENST00000596549 KIF7Q2M1P5 1343 aa18.01■□□□□ 0.47
LIG1-212ENST00000596549 WASHC2AQ641Q2 1341 aa18.01■□□□□ 0.47
LIG1-212ENST00000596549 ZCRB1Q8TBF4 217 aaKnown RBP18.01■□□□□ 0.47
LIG1-212ENST00000596549 COL24A1Q17RW2 1714 aa18.01■□□□□ 0.47
LIG1-212ENST00000596549 PPM1GO15355 546 aaPredicted RBP17.99■□□□□ 0.47
LIG1-212ENST00000596549 RAPGEF4Q8WZA2 1011 aa17.99■□□□□ 0.47
LIG1-212ENST00000596549 PDGFDQ9GZP0 370 aaPredicted RBP17.99■□□□□ 0.47
LIG1-212ENST00000596549 TNNT2P45379 298 aaPredicted RBP17.98■□□□□ 0.47
LIG1-212ENST00000596549 PCDH11XQ9BZA7 1347 aa17.98■□□□□ 0.47
LIG1-212ENST00000596549 PCDH11YQ9BZA8 1340 aa17.98■□□□□ 0.47
LIG1-212ENST00000596549 TATP17735 454 aaPredicted RBP17.97■□□□□ 0.47
LIG1-212ENST00000596549 VIRMAQ69YN4 1812 aaKnown RBP17.96■□□□□ 0.47
LIG1-212ENST00000596549 EYA1Q99502 592 aa17.96■□□□□ 0.47
LIG1-212ENST00000596549 LRRC4BQ9NT99 713 aa17.96■□□□□ 0.47
LIG1-212ENST00000596549 PRIM1P49642 420 aaKnown RBP17.95■□□□□ 0.46
LIG1-212ENST00000596549 EIF4A2Q14240 407 aaKnown RBP17.95■□□□□ 0.46
LIG1-212ENST00000596549 SLC15A2Q16348 729 aa17.95■□□□□ 0.46
LIG1-212ENST00000596549 CYP27B1O15528 508 aa17.94■□□□□ 0.46
LIG1-212ENST00000596549 ZNF827Q17R98 1081 aa17.94■□□□□ 0.46
LIG1-212ENST00000596549 SYTL4Q96C24 671 aaPredicted RBP17.94■□□□□ 0.46
LIG1-212ENST00000596549 STK32BQ9NY57 414 aa17.94■□□□□ 0.46
LIG1-212ENST00000596549 IGSF1Q8N6C5 1336 aa17.93■□□□□ 0.46
LIG1-212ENST00000596549 AMER1Q5JTC6 1135 aaPredicted RBP17.92■□□□□ 0.46
LIG1-212ENST00000596549 SPON1Q9HCB6 807 aa17.91■□□□□ 0.46
LIG1-212ENST00000596549 C4BP0C0L5 1744 aa17.91■□□□□ 0.46
LIG1-212ENST00000596549 PLEKHG2Q9H7P9 1386 aa17.91■□□□□ 0.46
LIG1-212ENST00000596549 UBR3Q6ZT12 1888 aa17.9■□□□□ 0.46
LIG1-212ENST00000596549 KCNQ4P56696 695 aa17.9■□□□□ 0.46
LIG1-212ENST00000596549 ZBTB7AO95365 584 aa17.89■□□□□ 0.45
LIG1-212ENST00000596549 SLC27A3Q5K4L6 730 aa17.89■□□□□ 0.45
LIG1-212ENST00000596549 MORC1Q86VD1 984 aa17.89■□□□□ 0.45
LIG1-212ENST00000596549 AKT1S1Q96B36 256 aa17.89■□□□□ 0.45
LIG1-212ENST00000596549 KNSTRNQ9Y448 316 aa17.89■□□□□ 0.45
LIG1-212ENST00000596549 SCN11AQ9UI33 1791 aa17.89■□□□□ 0.45
LIG1-212ENST00000596549 PER1O15534 1290 aaPredicted RBP17.88■□□□□ 0.45
LIG1-212ENST00000596549 COL5A3P25940 1745 aaPredicted RBP17.87■□□□□ 0.45
LIG1-212ENST00000596549 PTGER2P43116 358 aa17.87■□□□□ 0.45
LIG1-212ENST00000596549 PALLDQ8WX93 1383 aa17.87■□□□□ 0.45
LIG1-212ENST00000596549 ZNF831Q5JPB2 1677 aa17.87■□□□□ 0.45
LIG1-212ENST00000596549 NKX1-1Q15270 411 aaPredicted RBP17.86■□□□□ 0.45
LIG1-212ENST00000596549 COL3A1P02461 1466 aaPredicted RBP17.86■□□□□ 0.45
LIG1-212ENST00000596549 KDRP35968 1356 aa17.85■□□□□ 0.45
LIG1-212ENST00000596549 PNPLA7Q6ZV29 1317 aa17.85■□□□□ 0.45
LIG1-212ENST00000596549 SGIP1Q9BQI5 828 aa17.85■□□□□ 0.45
LIG1-212ENST00000596549 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.85■□□□□ 0.45
LIG1-212ENST00000596549 SPG7Q9UQ90 795 aa17.85■□□□□ 0.45
LIG1-212ENST00000596549 KDM6AO15550 1401 aaPredicted RBP17.84■□□□□ 0.45
LIG1-212ENST00000596549 PHKG2P15735 406 aa17.84■□□□□ 0.45
LIG1-212ENST00000596549 CCNL1Q9UK58 526 aaPredicted RBP17.84■□□□□ 0.45
LIG1-212ENST00000596549 ADAMTS7Q9UKP4 1686 aa17.83■□□□□ 0.45
LIG1-212ENST00000596549 CICQ96RK0 1608 aaPredicted RBP17.83■□□□□ 0.45
LIG1-212ENST00000596549 MPRIPQ6WCQ1 1025 aa17.83■□□□□ 0.44
LIG1-212ENST00000596549 AEBP1Q8IUX7 1158 aa17.83■□□□□ 0.44
LIG1-212ENST00000596549 MTFR1LQ9H019 292 aa17.83■□□□□ 0.44
LIG1-212ENST00000596549 PPP1R1BQ9UD71 204 aaPredicted RBP17.83■□□□□ 0.44
LIG1-212ENST00000596549 ATF5Q9Y2D1 282 aaPredicted RBP17.83■□□□□ 0.44
LIG1-212ENST00000596549 NPC1L1Q9UHC9 1359 aa17.82■□□□□ 0.44
LIG1-212ENST00000596549 TJP1Q07157 1748 aa17.81■□□□□ 0.44
LIG1-212ENST00000596549 IFNL2Q8IZJ0 200 aa17.81■□□□□ 0.44
LIG1-212ENST00000596549 PIGBQ92521 554 aa17.81■□□□□ 0.44
LIG1-212ENST00000596549 IL13P35225 146 aa17.8■□□□□ 0.44
LIG1-212ENST00000596549 CC2D1BQ5T0F9 858 aaKnown RBP17.8■□□□□ 0.44
LIG1-212ENST00000596549 C4AP0C0L4 1744 aa17.78■□□□□ 0.44
LIG1-212ENST00000596549 MRC1P22897 1456 aa17.77■□□□□ 0.44
LIG1-212ENST00000596549 MTHFSP49914 203 aa17.77■□□□□ 0.44
LIG1-212ENST00000596549 TFCP2L1Q9NZI6 479 aa17.77■□□□□ 0.44
LIG1-212ENST00000596549 SULT6B1Q6IMI4 303 aa17.76■□□□□ 0.43
LIG1-212ENST00000596549 TMOD3Q9NYL9 352 aa17.76■□□□□ 0.43
LIG1-212ENST00000596549 SIPA1L3O60292 1781 aaPredicted RBP17.76■□□□□ 0.43
LIG1-212ENST00000596549 ZNF530Q6P9A1 599 aaPredicted RBP17.75■□□□□ 0.43
LIG1-212ENST00000596549 AMIGO3Q86WK7 504 aa17.75■□□□□ 0.43
LIG1-212ENST00000596549 SMARCC1Q92922 1105 aaPredicted RBP17.75■□□□□ 0.43
LIG1-212ENST00000596549 UBR2Q8IWV8 1755 aa17.75■□□□□ 0.43
LIG1-212ENST00000596549 MAP3K5Q99683 1374 aa17.75■□□□□ 0.43
LIG1-212ENST00000596549 COL23A1Q86Y22 540 aaPredicted RBP17.74■□□□□ 0.43
LIG1-212ENST00000596549 SLC16A10Q8TF71 515 aa17.74■□□□□ 0.43
LIG1-212ENST00000596549 FHDC1Q9C0D6 1143 aaPredicted RBP17.74■□□□□ 0.43
LIG1-212ENST00000596549 ASAP1Q9ULH1 1129 aa17.74■□□□□ 0.43
LIG1-212ENST00000596549 MYH14Q7Z406 1995 aaKnown RBP17.73■□□□□ 0.43
LIG1-212ENST00000596549 AMOTQ4VCS5 1084 aa17.73■□□□□ 0.43
LIG1-212ENST00000596549 PLEKHO1Q53GL0 409 aaPredicted RBP17.73■□□□□ 0.43
LIG1-212ENST00000596549 LOC102724428A0A0B4J2F2 783 aa17.72■□□□□ 0.43
LIG1-212ENST00000596549 SIK1P57059 783 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms