RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 NUP188Q5SRE5 1749 aa27.97■■■□□ 2.07
SS18-224ENST00000584083 MEGF6O75095 1541 aa27.97■■■□□ 2.07
SS18-224ENST00000584083 NHSQ6T4R5 1651 aa27.96■■■□□ 2.07
SS18-224ENST00000584083 RGPD3A6NKT7 1758 aaPredicted RBP27.96■■■□□ 2.07
SS18-224ENST00000584083 RGPD4Q7Z3J3 1758 aa27.96■■■□□ 2.07
SS18-224ENST00000584083 TATP17735 454 aaPredicted RBP27.94■■■□□ 2.06
SS18-224ENST00000584083 NBPF14Q5TI25 921 aa27.94■■■□□ 2.06
SS18-224ENST00000584083 SHANK3Q9BYB0 1731 aa27.92■■■□□ 2.06
SS18-224ENST00000584083 BTAF1O14981 1849 aa27.89■■■□□ 2.06
SS18-224ENST00000584083 AMER1Q5JTC6 1135 aaPredicted RBP27.88■■■□□ 2.05
SS18-224ENST00000584083 EYA1Q99502 592 aa27.87■■■□□ 2.05
SS18-224ENST00000584083 EIF4A2Q14240 407 aaKnown RBP27.86■■■□□ 2.05
SS18-224ENST00000584083 TXNRD1Q16881 649 aa27.86■■■□□ 2.05
SS18-224ENST00000584083 PROM2Q8N271 834 aa27.86■■■□□ 2.05
SS18-224ENST00000584083 SYTL4Q96C24 671 aaPredicted RBP27.86■■■□□ 2.05
SS18-224ENST00000584083 DOT1LQ8TEK3 1739 aa27.85■■■□□ 2.05
SS18-224ENST00000584083 PER1O15534 1290 aaPredicted RBP27.83■■■□□ 2.05
SS18-224ENST00000584083 PRIM1P49642 420 aaKnown RBP27.83■■■□□ 2.05
SS18-224ENST00000584083 PCDH11XQ9BZA7 1347 aa27.83■■■□□ 2.05
SS18-224ENST00000584083 PCDH11YQ9BZA8 1340 aa27.83■■■□□ 2.05
SS18-224ENST00000584083 NCAPD2Q15021 1401 aa27.83■■■□□ 2.05
SS18-224ENST00000584083 CC2D1BQ5T0F9 858 aaKnown RBP27.8■■■□□ 2.04
SS18-224ENST00000584083 SRCAPQ6ZRS2 3230 aa27.8■■■□□ 2.04
SS18-224ENST00000584083 PKD1L3Q7Z443 1732 aa27.79■■■□□ 2.04
SS18-224ENST00000584083 SPG7Q9UQ90 795 aa27.79■■■□□ 2.04
SS18-224ENST00000584083 LRP5O75197 1615 aa27.78■■■□□ 2.04
SS18-224ENST00000584083 CNGB1Q14028 1251 aaPredicted RBP27.78■■■□□ 2.04
SS18-224ENST00000584083 ANO8Q9HCE9 1232 aaPredicted RBP27.77■■■□□ 2.04
SS18-224ENST00000584083 CYP27B1O15528 508 aa27.76■■■□□ 2.03
SS18-224ENST00000584083 STK32BQ9NY57 414 aa27.75■■■□□ 2.03
SS18-224ENST00000584083 IGSF1Q8N6C5 1336 aa27.74■■■□□ 2.03
SS18-224ENST00000584083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.73■■■□□ 2.033e-7■■□□□ 13.5
SS18-224ENST00000584083 MTHFSP49914 203 aa27.72■■■□□ 2.03
SS18-224ENST00000584083 SLC15A2Q16348 729 aa27.7■■■□□ 2.02
SS18-224ENST00000584083 NPC1L1Q9UHC9 1359 aa27.7■■■□□ 2.02
SS18-224ENST00000584083 ITGB4P16144 1822 aa27.69■■■□□ 2.02
SS18-224ENST00000584083 SLC27A3Q5K4L6 730 aa27.68■■■□□ 2.02
SS18-224ENST00000584083 MPRIPQ6WCQ1 1025 aa27.68■■■□□ 2.02
SS18-224ENST00000584083 LRRC4BQ9NT99 713 aa27.68■■■□□ 2.02
SS18-224ENST00000584083 IL13P35225 146 aa27.67■■■□□ 2.02
SS18-224ENST00000584083 IFNL2Q8IZJ0 200 aa27.67■■■□□ 2.02
SS18-224ENST00000584083 LY75O60449 1722 aa27.67■■■□□ 2.02
SS18-224ENST00000584083 TOGARAM1Q9Y4F4 1720 aa27.67■■■□□ 2.02
SS18-224ENST00000584083 NKX1-1Q15270 411 aaPredicted RBP27.66■■■□□ 2.02
SS18-224ENST00000584083 AEBP1Q8IUX7 1158 aa27.66■■■□□ 2.02
SS18-224ENST00000584083 PHKG2P15735 406 aa27.65■■■□□ 2.02
SS18-224ENST00000584083 KCNQ4P56696 695 aa27.65■■■□□ 2.02
SS18-224ENST00000584083 PLEKHO1Q53GL0 409 aaPredicted RBP27.65■■■□□ 2.02
SS18-224ENST00000584083 SULT6B1Q6IMI4 303 aa27.65■■■□□ 2.02
SS18-224ENST00000584083 PAPPAQ13219 1627 aa27.64■■■□□ 2.02
SS18-224ENST00000584083 PLEKHG2Q9H7P9 1386 aa27.64■■■□□ 2.02
SS18-224ENST00000584083 SPON1Q9HCB6 807 aa27.64■■■□□ 2.02
SS18-224ENST00000584083 CASZ1Q86V15 1759 aa27.63■■■□□ 2.01
SS18-224ENST00000584083 PDGFDQ9GZP0 370 aaPredicted RBP27.63■■■□□ 2.01
SS18-224ENST00000584083 CCNL1Q9UK58 526 aaPredicted RBP27.62■■■□□ 2.01
SS18-224ENST00000584083 AMOTQ4VCS5 1084 aa27.61■■■□□ 2.01
SS18-224ENST00000584083 DIAPH1O60610 1272 aaKnown RBP27.6■■■□□ 2.01
SS18-224ENST00000584083 ZNF827Q17R98 1081 aa27.6■■■□□ 2.01
SS18-224ENST00000584083 ZNF530Q6P9A1 599 aaPredicted RBP27.6■■■□□ 2.01
SS18-224ENST00000584083 PIGBQ92521 554 aa27.59■■■□□ 2.01
SS18-224ENST00000584083 TMOD3Q9NYL9 352 aa27.59■■■□□ 2.01
SS18-224ENST00000584083 ZBTB7AO95365 584 aa27.58■■■□□ 2.01
SS18-224ENST00000584083 SMARCC1Q92922 1105 aaPredicted RBP27.58■■■□□ 2.01
SS18-224ENST00000584083 KDRP35968 1356 aa27.58■■■□□ 2.01
SS18-224ENST00000584083 PALLDQ8WX93 1383 aa27.58■■■□□ 2.01
SS18-224ENST00000584083 HSP90AB1P08238 724 aaKnown RBP27.57■■■□□ 2
SS18-224ENST00000584083 PPP1R1BQ9UD71 204 aaPredicted RBP27.57■■■□□ 2
SS18-224ENST00000584083 HMOX1P09601 288 aa27.56■■■□□ 2
SS18-224ENST00000584083 AKT1S1Q96B36 256 aa27.56■■■□□ 2
SS18-224ENST00000584083 C1orf141Q5JVX7 400 aa27.55■■■□□ 2
SS18-224ENST00000584083 DCAF5Q96JK2 942 aa27.54■■■□□ 2
SS18-224ENST00000584083 TFCP2L1Q9NZI6 479 aa27.54■■■□□ 2
SS18-224ENST00000584083 ATF5Q9Y2D1 282 aaPredicted RBP27.54■■■□□ 2
SS18-224ENST00000584083 QSER1Q2KHR3 1735 aa27.51■■□□□ 1.99
SS18-224ENST00000584083 ERVV-2B6SEH9 535 aa27.51■■□□□ 1.99
SS18-224ENST00000584083 C5P01031 1676 aa27.51■■□□□ 1.99
SS18-224ENST00000584083 TUBGCP6Q96RT7 1819 aa27.51■■□□□ 1.99
SS18-224ENST00000584083 U2SURPO15042 1029 aaKnown RBP27.5■■□□□ 1.99
SS18-224ENST00000584083 HMGB2P26583 209 aaKnown RBP27.5■■□□□ 1.99
SS18-224ENST00000584083 CFAP53Q96M91 514 aa27.5■■□□□ 1.99
SS18-224ENST00000584083 MTFR1LQ9H019 292 aa27.5■■□□□ 1.99
SS18-224ENST00000584083 ASAP1Q9ULH1 1129 aa27.5■■□□□ 1.99
SS18-224ENST00000584083 TAF1LQ8IZX4 1826 aa27.5■■□□□ 1.99
SS18-224ENST00000584083 COL3A1P02461 1466 aaPredicted RBP27.5■■□□□ 1.99
SS18-224ENST00000584083 CABP4P57796 275 aa27.48■■□□□ 1.99
SS18-224ENST00000584083 KDM6AO15550 1401 aaPredicted RBP27.48■■□□□ 1.99
SS18-224ENST00000584083 PNPLA7Q6ZV29 1317 aa27.47■■□□□ 1.99
SS18-224ENST00000584083 PPP2R1AP30153 589 aa27.47■■□□□ 1.99
SS18-224ENST00000584083 ATG3Q9NT62 314 aa27.46■■□□□ 1.99
SS18-224ENST00000584083 LOC102724428A0A0B4J2F2 783 aa27.45■■□□□ 1.98
SS18-224ENST00000584083 PTGER2P43116 358 aa27.45■■□□□ 1.98
SS18-224ENST00000584083 SIK1P57059 783 aa27.45■■□□□ 1.98
SS18-224ENST00000584083 MSH5O43196 834 aa27.44■■□□□ 1.98
SS18-224ENST00000584083 AKAP4Q5JQC9 854 aa27.44■■□□□ 1.98
SS18-224ENST00000584083 SCN11AQ9UI33 1791 aa27.43■■□□□ 1.98
SS18-224ENST00000584083 SLC16A10Q8TF71 515 aa27.43■■□□□ 1.98
SS18-224ENST00000584083 C4BP0C0L5 1744 aa27.41■■□□□ 1.98
SS18-224ENST00000584083 NUDCQ9Y266 331 aa27.41■■□□□ 1.98
SS18-224ENST00000584083 VIRMAQ69YN4 1812 aaKnown RBP27.41■■□□□ 1.98
SS18-224ENST00000584083 ATP6V1AP38606 617 aa27.4■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms