RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 IL2RBP14784 551 aa12.63□□□□□ -0.39
RFFL-210ENST00000582308 TATP17735 454 aaPredicted RBP12.63□□□□□ -0.39
RFFL-210ENST00000582308 ZNF772Q68DY9 489 aaPredicted RBP12.63□□□□□ -0.39
RFFL-210ENST00000582308 GJD4Q96KN9 370 aaPredicted RBP12.63□□□□□ -0.39
RFFL-210ENST00000582308 OVOS2A0A0G2JMS6 1433 aa12.62□□□□□ -0.39
RFFL-210ENST00000582308 BARGINQ6ZT62 677 aa12.62□□□□□ -0.39
RFFL-210ENST00000582308 MAPK8IP3Q9UPT6 1336 aa12.62□□□□□ -0.39
RFFL-210ENST00000582308 TMPOP42166 694 aaKnown RBP12.61□□□□□ -0.39
RFFL-210ENST00000582308 FAM98CQ17RN3 349 aaKnown RBP12.61□□□□□ -0.39
RFFL-210ENST00000582308 MTHFSDQ2M296 383 aaKnown RBP12.61□□□□□ -0.39
RFFL-210ENST00000582308 PLEKHO1Q53GL0 409 aaPredicted RBP12.61□□□□□ -0.39
RFFL-210ENST00000582308 KAT6BQ8WYB5 2073 aa12.61□□□□□ -0.39
RFFL-210ENST00000582308 PLEKHG2Q9H7P9 1386 aa12.6□□□□□ -0.39
RFFL-210ENST00000582308 NEFMP07197 916 aa12.6□□□□□ -0.39
RFFL-210ENST00000582308 NFE2L2Q16236 605 aa12.6□□□□□ -0.39
RFFL-210ENST00000582308 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.6□□□□□ -0.39
RFFL-210ENST00000582308 RRP7AQ9Y3A4 280 aaKnown RBP12.6□□□□□ -0.39
RFFL-210ENST00000582308 THSD7AQ9UPZ6 1657 aa12.6□□□□□ -0.39
RFFL-210ENST00000582308 LRRC37A3O60309 1634 aa12.59□□□□□ -0.39
RFFL-210ENST00000582308 ONECUT3O60422 494 aaPredicted RBP12.59□□□□□ -0.39
RFFL-210ENST00000582308 AMOTQ4VCS5 1084 aa12.59□□□□□ -0.39
RFFL-210ENST00000582308 POTEAQ6S8J7 498 aa12.59□□□□□ -0.39
RFFL-210ENST00000582308 ZCRB1Q8TBF4 217 aaKnown RBP12.59□□□□□ -0.39
RFFL-210ENST00000582308 CDCA7Q9BWT1 371 aaPredicted RBP12.59□□□□□ -0.39
RFFL-210ENST00000582308 SPG7Q9UQ90 795 aa12.59□□□□□ -0.39
RFFL-210ENST00000582308 BRWD3Q6RI45 1802 aa12.59□□□□□ -0.39
RFFL-210ENST00000582308 RIPK4P57078 832 aa12.58□□□□□ -0.4
RFFL-210ENST00000582308 HNRNPUQ00839 825 aaKnown RBP eCLIP12.58□□□□□ -0.4
RFFL-210ENST00000582308 NEUROD2Q15784 382 aa12.58□□□□□ -0.4
RFFL-210ENST00000582308 ZNF530Q6P9A1 599 aaPredicted RBP12.58□□□□□ -0.4
RFFL-210ENST00000582308 GAS2L2Q8NHY3 880 aa12.58□□□□□ -0.4
RFFL-210ENST00000582308 PHF23Q9BUL5 403 aaPredicted RBP12.58□□□□□ -0.4
RFFL-210ENST00000582308 SCN11AQ9UI33 1791 aa12.57□□□□□ -0.4
RFFL-210ENST00000582308 CYP27B1O15528 508 aa12.57□□□□□ -0.4
RFFL-210ENST00000582308 RBM6P78332 1123 aaKnown RBP12.57□□□□□ -0.4
RFFL-210ENST00000582308 TRIM35Q9UPQ4 493 aa12.57□□□□□ -0.4
RFFL-210ENST00000582308 SALL2Q9Y467 1007 aaPredicted RBP12.57□□□□□ -0.4
RFFL-210ENST00000582308 TNS2Q63HR2 1409 aa12.56□□□□□ -0.4
RFFL-210ENST00000582308 EXOC5O00471 708 aa12.56□□□□□ -0.4
RFFL-210ENST00000582308 DDB1Q16531 1140 aa12.56□□□□□ -0.4
RFFL-210ENST00000582308 YTHDC1Q96MU7 727 aaKnown RBP12.56□□□□□ -0.4
RFFL-210ENST00000582308 GNAT3A8MTJ3 354 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 PHKG2P15735 406 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 RXRBP28702 533 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 NCBP3Q53F19 620 aaKnown RBP12.55□□□□□ -0.4
RFFL-210ENST00000582308 AKAP4Q5JQC9 854 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 SEPT12Q8IYM1 358 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 NGEFQ8N5V2 710 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 DDX54Q8TDD1 881 aaKnown RBP12.55□□□□□ -0.4
RFFL-210ENST00000582308 PCDH11XQ9BZA7 1347 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 PCDH11YQ9BZA8 1340 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 MAP3K5Q99683 1374 aa12.55□□□□□ -0.4
RFFL-210ENST00000582308 ADAMTS7Q9UKP4 1686 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 A0A0G2JS52 829 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 MYT1Q01538 1121 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 DCTN1Q14203 1278 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 CCDC27Q2M243 656 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 C1orf141Q5JVX7 400 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 IFNL2Q8IZJ0 200 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 IL17REQ8NFR9 667 aa12.54□□□□□ -0.4
RFFL-210ENST00000582308 ITGB4P16144 1822 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 HTATSF1O43719 755 aaKnown RBP12.53□□□□□ -0.4
RFFL-210ENST00000582308 NKX1-1Q15270 411 aaPredicted RBP12.53□□□□□ -0.4
RFFL-210ENST00000582308 MPRIPQ6WCQ1 1025 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 MCM10Q7L590 875 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 WWC1Q8IX03 1113 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 MARCH10Q8NA82 808 aaPredicted RBP12.53□□□□□ -0.4
RFFL-210ENST00000582308 THUMPD2Q9BTF0 503 aaKnown RBP12.53□□□□□ -0.4
RFFL-210ENST00000582308 LGR6Q9HBX8 967 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 ZNF521Q96K83 1311 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 TOGARAM1Q9Y4F4 1720 aa12.53□□□□□ -0.4
RFFL-210ENST00000582308 SIPA1L3O60292 1781 aaPredicted RBP12.53□□□□□ -0.4
RFFL-210ENST00000582308 KDM6AO15550 1401 aaPredicted RBP12.52□□□□□ -0.41
RFFL-210ENST00000582308 SBF2Q86WG5 1849 aa12.51□□□□□ -0.41
RFFL-210ENST00000582308 RNMTO43148 476 aaKnown RBP12.51□□□□□ -0.41
RFFL-210ENST00000582308 HSP90AB1P08238 724 aaKnown RBP12.51□□□□□ -0.41
RFFL-210ENST00000582308 LMOD3Q0VAK6 560 aa12.51□□□□□ -0.41
RFFL-210ENST00000582308 PDE3BQ13370 1112 aa12.51□□□□□ -0.41
RFFL-210ENST00000582308 RTF1Q92541 710 aaKnown RBP12.51□□□□□ -0.41
RFFL-210ENST00000582308 ZBED9Q6R2W3 1325 aa12.51□□□□□ -0.41
RFFL-210ENST00000582308 DCAF5Q96JK2 942 aa12.5□□□□□ -0.41
RFFL-210ENST00000582308 CEMIPQ8WUJ3 1361 aa12.5□□□□□ -0.41
RFFL-210ENST00000582308 RGS12O14924 1447 aa12.5□□□□□ -0.41
RFFL-210ENST00000582308 DOT1LQ8TEK3 1739 aa12.5□□□□□ -0.41
RFFL-210ENST00000582308 WDR63Q8IWG1 891 aa12.49□□□□□ -0.41
RFFL-210ENST00000582308 FAM182BQ5T319 152 aa12.48□□□□□ -0.41
RFFL-210ENST00000582308 SPINK5Q9NQ38 1064 aaPredicted RBP12.48□□□□□ -0.41
RFFL-210ENST00000582308 MRC1P22897 1456 aa12.47□□□□□ -0.41
RFFL-210ENST00000582308 IL16Q14005 1332 aa12.47□□□□□ -0.41
RFFL-210ENST00000582308 ERVV-2B6SEH9 535 aa12.47□□□□□ -0.41
RFFL-210ENST00000582308 KRT27Q7Z3Y8 459 aa12.47□□□□□ -0.41
RFFL-210ENST00000582308 CDCA7LQ96GN5 454 aa12.47□□□□□ -0.41
RFFL-210ENST00000582308 ZNF853P0CG23 659 aa12.46□□□□□ -0.41
RFFL-210ENST00000582308 GOLGA2Q08379 1002 aa12.46□□□□□ -0.41
RFFL-210ENST00000582308 TAF7Q15545 349 aaPredicted RBP12.46□□□□□ -0.41
RFFL-210ENST00000582308 NFATC2IPQ8NCF5 419 aa12.46□□□□□ -0.41
RFFL-210ENST00000582308 SLC52A2Q9HAB3 445 aa12.46□□□□□ -0.41
RFFL-210ENST00000582308 EP400Q96L91 3159 aa12.46□□□□□ -0.42
RFFL-210ENST00000582308 KDM3BQ7LBC6 1761 aa12.46□□□□□ -0.42
RFFL-210ENST00000582308 BCL9O00512 1426 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms