RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HSPA1LP34931 641 aa17.84■□□□□ 0.45
CCDC40-209ENST00000573474 RTF1Q92541 710 aaKnown RBP17.84■□□□□ 0.45
CCDC40-209ENST00000573474 GNAT3A8MTJ3 354 aa17.83■□□□□ 0.44
CCDC40-209ENST00000573474 LARP1Q6PKG0 1096 aaKnown RBP17.83■□□□□ 0.44
CCDC40-209ENST00000573474 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC40-209ENST00000573474 DLG5Q8TDM6 1919 aa17.82■□□□□ 0.44
CCDC40-209ENST00000573474 MAP3K5Q99683 1374 aa17.81■□□□□ 0.44
CCDC40-209ENST00000573474 GNAI1P63096 354 aa17.81■□□□□ 0.44
CCDC40-209ENST00000573474 DCTN1Q14203 1278 aa17.81■□□□□ 0.44
CCDC40-209ENST00000573474 ZNF530Q6P9A1 599 aaPredicted RBP17.81■□□□□ 0.44
CCDC40-209ENST00000573474 THUMPD2Q9BTF0 503 aaKnown RBP17.81■□□□□ 0.44
CCDC40-209ENST00000573474 IFT57Q9NWB7 429 aa17.81■□□□□ 0.44
CCDC40-209ENST00000573474 CRB1P82279 1406 aa17.81■□□□□ 0.44
CCDC40-209ENST00000573474 AKAP4Q5JQC9 854 aa17.8■□□□□ 0.44
CCDC40-209ENST00000573474 MCM10Q7L590 875 aa17.8■□□□□ 0.44
CCDC40-209ENST00000573474 SPG7Q9UQ90 795 aa17.8■□□□□ 0.44
CCDC40-209ENST00000573474 SUPT16HQ9Y5B9 1047 aaKnown RBP17.8■□□□□ 0.44
CCDC40-209ENST00000573474 ZNF853P0CG23 659 aa17.79■□□□□ 0.44
CCDC40-209ENST00000573474 C1orf141Q5JVX7 400 aa17.79■□□□□ 0.44
CCDC40-209ENST00000573474 RCAN3Q9UKA8 241 aa17.79■□□□□ 0.44
CCDC40-209ENST00000573474 CFAP44Q96MT7 982 aa17.78■□□□□ 0.44
CCDC40-209ENST00000573474 LAS1LQ9Y4W2 734 aaKnown RBP17.78■□□□□ 0.44
CCDC40-209ENST00000573474 MEGF6O75095 1541 aa17.77■□□□□ 0.44
CCDC40-209ENST00000573474 FANCIQ9NVI1 1328 aa17.77■□□□□ 0.44
CCDC40-209ENST00000573474 IL2RBP14784 551 aa17.76■□□□□ 0.43
CCDC40-209ENST00000573474 IL17REQ8NFR9 667 aa17.76■□□□□ 0.43
CCDC40-209ENST00000573474 TSR2Q969E8 191 aaKnown RBP17.76■□□□□ 0.43
CCDC40-209ENST00000573474 SLIT2O94813 1529 aa17.76■□□□□ 0.43
CCDC40-209ENST00000573474 OVOS2A0A0G2JMS6 1433 aa17.75■□□□□ 0.43
CCDC40-209ENST00000573474 PLCH1Q4KWH8 1693 aa17.75■□□□□ 0.43
CCDC40-209ENST00000573474 NGLY1Q96IV0 654 aa17.75■□□□□ 0.43
CCDC40-209ENST00000573474 CHL1O00533 1208 aa17.74■□□□□ 0.43
CCDC40-209ENST00000573474 CT47B1P0C2W7 299 aaPredicted RBP17.74■□□□□ 0.43
CCDC40-209ENST00000573474 IFNL2Q8IZJ0 200 aa17.74■□□□□ 0.43
CCDC40-209ENST00000573474 ZCRB1Q8TBF4 217 aaKnown RBP17.74■□□□□ 0.43
CCDC40-209ENST00000573474 NWD2Q9ULI1 1742 aa17.73■□□□□ 0.43
CCDC40-209ENST00000573474 EXOSC9Q06265 439 aaKnown RBP17.73■□□□□ 0.43
CCDC40-209ENST00000573474 C8orf37Q96NL8 207 aa17.73■□□□□ 0.43
CCDC40-209ENST00000573474 MBIPQ9NS73 344 aa17.73■□□□□ 0.43
CCDC40-209ENST00000573474 BABAM1Q9NWV8 329 aa17.73■□□□□ 0.43
CCDC40-209ENST00000573474 USP35Q9P2H5 1018 aa17.73■□□□□ 0.43
CCDC40-209ENST00000573474 CEMIPQ8WUJ3 1361 aa17.73■□□□□ 0.43
CCDC40-209ENST00000573474 RNF123Q5XPI4 1314 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 RNMTO43148 476 aaKnown RBP17.72■□□□□ 0.43
CCDC40-209ENST00000573474 NEFLP07196 543 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 PHKG2P15735 406 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 TAF7Q15545 349 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-209ENST00000573474 MPRIPQ6WCQ1 1025 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 UNC5CLQ8IV45 518 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 FNBP4Q8N3X1 1017 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-209ENST00000573474 LGR6Q9HBX8 967 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 THRAP3Q9Y2W1 955 aaKnown RBP17.72■□□□□ 0.43
CCDC40-209ENST00000573474 NRAPQ86VF7 1730 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 PARP4Q9UKK3 1724 aaKnown RBP17.72■□□□□ 0.43
CCDC40-209ENST00000573474 LRP6O75581 1613 aa17.72■□□□□ 0.43
CCDC40-209ENST00000573474 HSP90AB1P08238 724 aaKnown RBP17.71■□□□□ 0.43
CCDC40-209ENST00000573474 MEX3CQ5U5Q3 659 aaKnown RBP17.71■□□□□ 0.43
CCDC40-209ENST00000573474 GTF3C3Q9Y5Q9 886 aa17.71■□□□□ 0.43
CCDC40-209ENST00000573474 PKD1L3Q7Z443 1732 aa17.71■□□□□ 0.43
CCDC40-209ENST00000573474 SPATA31A1Q5TZJ5 1347 aa17.71■□□□□ 0.42
CCDC40-209ENST00000573474 CYP27B1O15528 508 aa17.7■□□□□ 0.42
CCDC40-209ENST00000573474 CDCA7Q9BWT1 371 aaPredicted RBP17.7■□□□□ 0.42
CCDC40-209ENST00000573474 SPATA31A5Q5VU36 1347 aa17.7■□□□□ 0.42
CCDC40-209ENST00000573474 SPATA31A7Q8IWB4 1347 aa17.7■□□□□ 0.42
CCDC40-209ENST00000573474 PCDH11XQ9BZA7 1347 aa17.7■□□□□ 0.42
CCDC40-209ENST00000573474 PCDH11YQ9BZA8 1340 aa17.7■□□□□ 0.42
CCDC40-209ENST00000573474 LRRC37A3O60309 1634 aa17.69■□□□□ 0.42
CCDC40-209ENST00000573474 TEFQ10587 303 aa17.69■□□□□ 0.42
CCDC40-209ENST00000573474 DCAF5Q96JK2 942 aa17.69■□□□□ 0.42
CCDC40-209ENST00000573474 TSPYL4Q9UJ04 414 aa17.69■□□□□ 0.42
CCDC40-209ENST00000573474 DISP2A7MBM2 1401 aa17.69■□□□□ 0.42
CCDC40-209ENST00000573474 VPS72Q15906 364 aa17.68■□□□□ 0.42
CCDC40-209ENST00000573474 BCL9LQ86UU0 1499 aa17.68■□□□□ 0.42
CCDC40-209ENST00000573474 RARSP54136 660 aaKnown RBP17.67■□□□□ 0.42
CCDC40-209ENST00000573474 RRP1P56182 461 aaKnown RBP17.67■□□□□ 0.42
CCDC40-209ENST00000573474 MIS18AQ9NYP9 233 aa17.67■□□□□ 0.42
CCDC40-209ENST00000573474 USP21Q9UK80 565 aa17.67■□□□□ 0.42
CCDC40-209ENST00000573474 CCDC9Q9Y3X0 531 aaKnown RBP17.67■□□□□ 0.42
CCDC40-209ENST00000573474 NKX1-1Q15270 411 aaPredicted RBP17.66■□□□□ 0.42
CCDC40-209ENST00000573474 BARGINQ6ZT62 677 aa17.66■□□□□ 0.42
CCDC40-209ENST00000573474 ZNF428Q96B54 188 aa17.66■□□□□ 0.42
CCDC40-209ENST00000573474 ADAMTS7Q9UKP4 1686 aa17.65■□□□□ 0.42
CCDC40-209ENST00000573474 EXOC5O00471 708 aa17.65■□□□□ 0.42
CCDC40-209ENST00000573474 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.65■□□□□ 0.42
CCDC40-209ENST00000573474 DDX54Q8TDD1 881 aaKnown RBP17.65■□□□□ 0.42
CCDC40-209ENST00000573474 KDM6AO15550 1401 aaPredicted RBP17.64■□□□□ 0.42
CCDC40-209ENST00000573474 VAMP4O75379 141 aa17.64■□□□□ 0.41
CCDC40-209ENST00000573474 FKBP8Q14318 412 aa17.64■□□□□ 0.41
CCDC40-209ENST00000573474 C8orf58Q8NAV2 365 aa17.64■□□□□ 0.41
CCDC40-209ENST00000573474 BTBD11A6QL63 1104 aa17.63■□□□□ 0.41
CCDC40-209ENST00000573474 BCAR3O75815 825 aa17.63■□□□□ 0.41
CCDC40-209ENST00000573474 TWISTNBQ3B726 338 aaPredicted RBP17.63■□□□□ 0.41
CCDC40-209ENST00000573474 TSPYL6Q8N831 410 aa17.63■□□□□ 0.41
CCDC40-209ENST00000573474 SLC52A2Q9HAB3 445 aa17.63■□□□□ 0.41
CCDC40-209ENST00000573474 ALDH1L2Q3SY69 923 aa17.62■□□□□ 0.41
CCDC40-209ENST00000573474 AFF2P51816 1311 aa17.62■□□□□ 0.41
CCDC40-209ENST00000573474 ERVV-2B6SEH9 535 aa17.61■□□□□ 0.41
CCDC40-209ENST00000573474 ELL2O00472 640 aaPredicted RBP17.61■□□□□ 0.41
CCDC40-209ENST00000573474 FBXO41Q8TF61 875 aa17.61■□□□□ 0.41
CCDC40-209ENST00000573474 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms