RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 FAM69CQ0P6D2 419 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 TSHZ3Q63HK5 1081 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 MSH6P52701 1360 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 NASPP49321 788 aaPredicted RBP21.06■□□□□ 0.96
VPS53-215ENST00000573028 HSP90AB2PQ58FF8 381 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 ZGPATQ8N5A5 531 aaKnown RBP21.06■□□□□ 0.96
VPS53-215ENST00000573028 CHAMP1Q96JM3 812 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 PTMSP20962 102 aa21.05■□□□□ 0.96
VPS53-215ENST00000573028 ANP32BQ92688 251 aaKnown RBP21.05■□□□□ 0.96
VPS53-215ENST00000573028 RPAP2Q8IXW5 612 aaPredicted RBP21.04■□□□□ 0.96
VPS53-215ENST00000573028 CDK12Q9NYV4 1490 aaPredicted RBP21.04■□□□□ 0.96
VPS53-215ENST00000573028 NOL8Q76FK4 1167 aaKnown RBP21.04■□□□□ 0.96
VPS53-215ENST00000573028 CPS1P31327 1500 aa21.04■□□□□ 0.96
VPS53-215ENST00000573028 CPSF1Q10570 1443 aaKnown RBP21.03■□□□□ 0.96
VPS53-215ENST00000573028 FOXO3O43524 673 aa21.03■□□□□ 0.96
VPS53-215ENST00000573028 NECTIN2Q92692 538 aa21.03■□□□□ 0.96
VPS53-215ENST00000573028 ESF1Q9H501 851 aaKnown RBP21.03■□□□□ 0.96
VPS53-215ENST00000573028 ST18O60284 1047 aa21.02■□□□□ 0.96
VPS53-215ENST00000573028 KLHL40Q2TBA0 621 aa21.02■□□□□ 0.95
VPS53-215ENST00000573028 G2E3Q7L622 706 aa21.02■□□□□ 0.95
VPS53-215ENST00000573028 RICTORQ6R327 1708 aa21.02■□□□□ 0.95
VPS53-215ENST00000573028 PRPF40AO75400 957 aaKnown RBP21.01■□□□□ 0.95
VPS53-215ENST00000573028 NUCB2P80303 420 aa21.01■□□□□ 0.95
VPS53-215ENST00000573028 EXOC6BQ9Y2D4 811 aa21.01■□□□□ 0.95
VPS53-215ENST00000573028 CHL1O00533 1208 aa21.01■□□□□ 0.95
VPS53-215ENST00000573028 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.01■□□□□ 0.95
VPS53-215ENST00000573028 PRR36Q9H6K5 1346 aa21.01■□□□□ 0.95
VPS53-215ENST00000573028 A2ML1A8K2U0 1454 aa21.01■□□□□ 0.95
VPS53-215ENST00000573028 RTL1A6NKG5 1358 aa21■□□□□ 0.95
VPS53-215ENST00000573028 AATKQ6ZMQ8 1374 aa21■□□□□ 0.95
VPS53-215ENST00000573028 HAP1P54257 671 aaPredicted RBP21■□□□□ 0.95
VPS53-215ENST00000573028 TSPYL4Q9UJ04 414 aa20.99■□□□□ 0.95
VPS53-215ENST00000573028 ATP10DQ9P241 1426 aa20.99■□□□□ 0.95
VPS53-215ENST00000573028 REC8O95072 547 aa20.99■□□□□ 0.95
VPS53-215ENST00000573028 RBM27Q9P2N5 1060 aaKnown RBP20.99■□□□□ 0.95
VPS53-215ENST00000573028 RTF1Q92541 710 aaKnown RBP20.98■□□□□ 0.95
VPS53-215ENST00000573028 DLG5Q8TDM6 1919 aa20.98■□□□□ 0.95
VPS53-215ENST00000573028 KNDC1Q76NI1 1749 aa20.98■□□□□ 0.95
VPS53-215ENST00000573028 HMMRO75330 724 aa20.97■□□□□ 0.95
VPS53-215ENST00000573028 NEK4P51957 841 aa20.97■□□□□ 0.95
VPS53-215ENST00000573028 FOXD4L6Q3SYB3 417 aaPredicted RBP20.97■□□□□ 0.95
VPS53-215ENST00000573028 FOXD4L3Q6VB84 417 aaPredicted RBP20.97■□□□□ 0.95
VPS53-215ENST00000573028 ERC2O15083 957 aa20.97■□□□□ 0.95
VPS53-215ENST00000573028 ACEP12821 1306 aa20.96■□□□□ 0.95
VPS53-215ENST00000573028 TTC21BQ7Z4L5 1316 aa20.96■□□□□ 0.95
VPS53-215ENST00000573028 PLPPR3Q6T4P5 718 aa20.96■□□□□ 0.95
VPS53-215ENST00000573028 CCDC173Q0VFZ6 552 aa20.95■□□□□ 0.94
VPS53-215ENST00000573028 RILPL2Q969X0 211 aa20.95■□□□□ 0.94
VPS53-215ENST00000573028 LMBRD1Q9NUN5 540 aa20.95■□□□□ 0.94
VPS53-215ENST00000573028 TRIM6-TRIM34B2RNG4 842 aa20.95■□□□□ 0.94
VPS53-215ENST00000573028 ZSCAN23Q3MJ62 389 aa20.95■□□□□ 0.94
VPS53-215ENST00000573028 RGS12O14924 1447 aa20.94■□□□□ 0.94
VPS53-215ENST00000573028 PTPRCP08575 1304 aa20.94■□□□□ 0.94
VPS53-215ENST00000573028 PDE1AP54750 535 aa20.94■□□□□ 0.94
VPS53-215ENST00000573028 UBE2Q2Q8WVN8 375 aa20.94■□□□□ 0.94
VPS53-215ENST00000573028 KIF24Q5T7B8 1368 aa20.94■□□□□ 0.94
VPS53-215ENST00000573028 TPRNQ4KMQ1 711 aa20.94■□□□□ 0.94
VPS53-215ENST00000573028 MTHFSDQ2M296 383 aaKnown RBP20.93■□□□□ 0.94
VPS53-215ENST00000573028 DLC1Q96QB1 1528 aa20.92■□□□□ 0.94
VPS53-215ENST00000573028 FKBP5Q13451 457 aaPredicted RBP20.92■□□□□ 0.94
VPS53-215ENST00000573028 ANO2Q9NQ90 1003 aa20.92■□□□□ 0.94
VPS53-215ENST00000573028 CLEC17AQ6ZS10 378 aa20.91■□□□□ 0.94
VPS53-215ENST00000573028 STK31Q9BXU1 1019 aa20.91■□□□□ 0.94
VPS53-215ENST00000573028 MSNP26038 577 aaKnown RBP20.91■□□□□ 0.94
VPS53-215ENST00000573028 PRIM1P49642 420 aaKnown RBP20.91■□□□□ 0.94
VPS53-215ENST00000573028 CWC22Q9HCG8 908 aaKnown RBP20.91■□□□□ 0.94
VPS53-215ENST00000573028 RBSNQ9H1K0 784 aa20.91■□□□□ 0.94
VPS53-215ENST00000573028 ZDHHC9Q9Y397 364 aa20.91■□□□□ 0.94
VPS53-215ENST00000573028 MAP3K19Q56UN5 1328 aa20.9■□□□□ 0.94
VPS53-215ENST00000573028 GNAI2P04899 355 aa20.9■□□□□ 0.94
VPS53-215ENST00000573028 CYP2E1P05181 493 aaPredicted RBP20.9■□□□□ 0.94
VPS53-215ENST00000573028 HSP90AA2PQ14568 343 aaPredicted RBP20.9■□□□□ 0.94
VPS53-215ENST00000573028 GPT2Q8TD30 523 aa20.89■□□□□ 0.94
VPS53-215ENST00000573028 SLC26A8Q96RN1 970 aa20.89■□□□□ 0.93
VPS53-215ENST00000573028 AMPHP49418 695 aa20.88■□□□□ 0.93
VPS53-215ENST00000573028 RNF214Q8ND24 703 aa20.88■□□□□ 0.93
VPS53-215ENST00000573028 TMX3Q96JJ7 454 aa20.88■□□□□ 0.93
VPS53-215ENST00000573028 SYCE3A1L190 88 aa20.88■□□□□ 0.93
VPS53-215ENST00000573028 CCT4P50991 539 aaKnown RBP20.88■□□□□ 0.93
VPS53-215ENST00000573028 UPF3BQ9BZI7 483 aaKnown RBP20.88■□□□□ 0.93
VPS53-215ENST00000573028 NSFL1CQ9UNZ2 370 aaKnown RBP20.88■□□□□ 0.93
VPS53-215ENST00000573028 KIAA0232Q92628 1395 aa20.88■□□□□ 0.93
VPS53-215ENST00000573028 NUTM2GQ5VZR2 741 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 ZSCAN30Q86W11 494 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 PALD1Q9ULE6 856 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 ROBO2Q9HCK4 1378 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 PNMA6EA0A0J9YXQ4 647 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 HDGFP51858 240 aaKnown RBP20.87■□□□□ 0.93
VPS53-215ENST00000573028 PPP1R9BQ96SB3 815 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 ZNF445P59923 1031 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 LTV1Q96GA3 475 aaPredicted RBP20.87■□□□□ 0.93
VPS53-215ENST00000573028 LRRCC1Q9C099 1032 aa20.87■□□□□ 0.93
VPS53-215ENST00000573028 RIMBP3CA6NJZ7 1639 aa20.86■□□□□ 0.93
VPS53-215ENST00000573028 RIMBP3BA6NNM3 1639 aa20.86■□□□□ 0.93
VPS53-215ENST00000573028 RIMBP3Q9UFD9 1639 aa20.86■□□□□ 0.93
VPS53-215ENST00000573028 IL1RAPL2Q9NP60 686 aa20.86■□□□□ 0.93
VPS53-215ENST00000573028 MAP4K4O95819 1239 aaPredicted RBP20.85■□□□□ 0.93
VPS53-215ENST00000573028 MX1P20591 662 aa20.85■□□□□ 0.93
VPS53-215ENST00000573028 KIAA1211Q6ZU35 1233 aa20.85■□□□□ 0.93
VPS53-215ENST00000573028 TMEM63CQ9P1W3 806 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms