RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 DOT1LQ8TEK3 1739 aa24.81■■□□□ 1.56
CLK3-221ENST00000568139 AMPHP49418 695 aa24.81■■□□□ 1.56
CLK3-221ENST00000568139 TUBGCP6Q96RT7 1819 aa24.81■■□□□ 1.56
CLK3-221ENST00000568139 PNPLA7Q6ZV29 1317 aa24.81■■□□□ 1.56
CLK3-221ENST00000568139 ZCRB1Q8TBF4 217 aaKnown RBP24.8■■□□□ 1.56
CLK3-221ENST00000568139 NSD2O96028 1365 aa24.8■■□□□ 1.56
CLK3-221ENST00000568139 SYTL4Q96C24 671 aaPredicted RBP24.79■■□□□ 1.56
CLK3-221ENST00000568139 KCNQ4P56696 695 aa24.78■■□□□ 1.56
CLK3-221ENST00000568139 MEGF6O75095 1541 aa24.77■■□□□ 1.56
CLK3-221ENST00000568139 TFCP2L1Q9NZI6 479 aa24.77■■□□□ 1.56
CLK3-221ENST00000568139 RTL1A6NKG5 1358 aa24.77■■□□□ 1.56
CLK3-221ENST00000568139 POLD1P28340 1107 aa24.76■■□□□ 1.55
CLK3-221ENST00000568139 GPR162Q16538 588 aa24.74■■□□□ 1.55
CLK3-221ENST00000568139 NBPF6Q5VWK0 638 aa24.74■■□□□ 1.55
CLK3-221ENST00000568139 NBPF4Q96M43 638 aa24.74■■□□□ 1.55
CLK3-221ENST00000568139 CGNL1Q0VF96 1302 aa24.73■■□□□ 1.55
CLK3-221ENST00000568139 FYB1O15117 783 aa24.73■■□□□ 1.55
CLK3-221ENST00000568139 RRS1Q15050 365 aaKnown RBP24.73■■□□□ 1.55
CLK3-221ENST00000568139 CCNL1Q9UK58 526 aaPredicted RBP24.71■■□□□ 1.55
CLK3-221ENST00000568139 KLHL34Q8N239 644 aa24.7■■□□□ 1.54
CLK3-221ENST00000568139 GGNBP2Q9H3C7 697 aa24.7■■□□□ 1.54
CLK3-221ENST00000568139 USP47Q96K76 1375 aa24.68■■□□□ 1.54
CLK3-221ENST00000568139 USHBP1Q8N6Y0 703 aa24.68■■□□□ 1.54
CLK3-221ENST00000568139 TMF1P82094 1093 aa24.67■■□□□ 1.54
CLK3-221ENST00000568139 RAPGEF4Q8WZA2 1011 aa24.67■■□□□ 1.54
CLK3-221ENST00000568139 SMG6Q86US8 1419 aaKnown RBP24.67■■□□□ 1.54
CLK3-221ENST00000568139 C1QTNF8P60827 252 aa24.66■■□□□ 1.54
CLK3-221ENST00000568139 COL23A1Q86Y22 540 aaPredicted RBP24.66■■□□□ 1.54
CLK3-221ENST00000568139 NLGN2Q8NFZ4 835 aa24.66■■□□□ 1.54
CLK3-221ENST00000568139 INSRP06213 1382 aa24.66■■□□□ 1.54
CLK3-221ENST00000568139 TATP17735 454 aaPredicted RBP24.65■■□□□ 1.54
CLK3-221ENST00000568139 KIF20BQ96Q89 1820 aa24.64■■□□□ 1.54
CLK3-221ENST00000568139 HSP90AB2PQ58FF8 381 aa24.64■■□□□ 1.54
CLK3-221ENST00000568139 PELP1Q8IZL8 1130 aaKnown RBP24.63■■□□□ 1.53
CLK3-221ENST00000568139 KIF24Q5T7B8 1368 aa24.63■■□□□ 1.53
CLK3-221ENST00000568139 C5P01031 1676 aa24.62■■□□□ 1.53
CLK3-221ENST00000568139 PCDH11XQ9BZA7 1347 aa24.62■■□□□ 1.53
CLK3-221ENST00000568139 PCDH11YQ9BZA8 1340 aa24.62■■□□□ 1.53
CLK3-221ENST00000568139 MSH5O43196 834 aa24.62■■□□□ 1.53
CLK3-221ENST00000568139 TAF1LQ8IZX4 1826 aa24.62■■□□□ 1.53
CLK3-221ENST00000568139 FLT4P35916 1363 aa24.62■■□□□ 1.53
CLK3-221ENST00000568139 HMGB2P26583 209 aaKnown RBP24.61■■□□□ 1.53
CLK3-221ENST00000568139 GOLGB1Q14789 3259 aaKnown RBP24.6■■□□□ 1.53
CLK3-221ENST00000568139 SENP3-EIF4A1A0A087X0R7 540 aa24.59■■□□□ 1.53
CLK3-221ENST00000568139 CDCA8Q53HL2 280 aa24.59■■□□□ 1.53
CLK3-221ENST00000568139 ITGB4P16144 1822 aa24.58■■□□□ 1.53
CLK3-221ENST00000568139 CYP27B1O15528 508 aa24.58■■□□□ 1.53
CLK3-221ENST00000568139 PALLDQ8WX93 1383 aa24.57■■□□□ 1.52
CLK3-221ENST00000568139 GRIN3BO60391 1043 aa24.57■■□□□ 1.52
CLK3-221ENST00000568139 YBX3P16989 372 aaKnown RBP eCLIP24.57■■□□□ 1.52
CLK3-221ENST00000568139 FLAD1Q8NFF5 587 aa24.57■■□□□ 1.52
CLK3-221ENST00000568139 MSL1Q68DK7 614 aa24.56■■□□□ 1.52
CLK3-221ENST00000568139 MPRIPQ6WCQ1 1025 aa24.56■■□□□ 1.52
CLK3-221ENST00000568139 CARD14Q9BXL6 1004 aa24.56■■□□□ 1.52
CLK3-221ENST00000568139 PKD1L3Q7Z443 1732 aa24.55■■□□□ 1.52
CLK3-221ENST00000568139 TOGARAM1Q9Y4F4 1720 aa24.55■■□□□ 1.52
CLK3-221ENST00000568139 GIGYF1O75420 1035 aaPredicted RBP24.54■■□□□ 1.52
CLK3-221ENST00000568139 NCAPD2Q15021 1401 aa24.53■■□□□ 1.52
CLK3-221ENST00000568139 SMARCC1Q92922 1105 aaPredicted RBP24.53■■□□□ 1.52
CLK3-221ENST00000568139 CD2APQ9Y5K6 639 aa24.53■■□□□ 1.52
CLK3-221ENST00000568139 EMILIN1Q9Y6C2 1016 aa24.53■■□□□ 1.52
CLK3-221ENST00000568139 C4BP0C0L5 1744 aa24.52■■□□□ 1.52
CLK3-221ENST00000568139 NKX1-1Q15270 411 aaPredicted RBP24.51■■□□□ 1.51
CLK3-221ENST00000568139 UBR3Q6ZT12 1888 aa24.5■■□□□ 1.51
CLK3-221ENST00000568139 PIGBQ92521 554 aa24.5■■□□□ 1.51
CLK3-221ENST00000568139 NSD3Q9BZ95 1437 aa24.5■■□□□ 1.51
CLK3-221ENST00000568139 ANKRD26Q9UPS8 1709 aa24.49■■□□□ 1.51
CLK3-221ENST00000568139 MAP2P11137 1827 aaKnown RBP24.49■■□□□ 1.51
CLK3-221ENST00000568139 AMIGO3Q86WK7 504 aa24.48■■□□□ 1.51
CLK3-221ENST00000568139 WASHC2AQ641Q2 1341 aa24.47■■□□□ 1.51
CLK3-221ENST00000568139 AK7Q96M32 723 aa24.47■■□□□ 1.51
CLK3-221ENST00000568139 SPG7Q9UQ90 795 aa24.47■■□□□ 1.51
CLK3-221ENST00000568139 PPM1GO15355 546 aaPredicted RBP24.45■■□□□ 1.5
CLK3-221ENST00000568139 EYA1Q99502 592 aa24.45■■□□□ 1.5
CLK3-221ENST00000568139 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.45■■□□□ 1.5
CLK3-221ENST00000568139 LOC102724428A0A0B4J2F2 783 aa24.43■■□□□ 1.5
CLK3-221ENST00000568139 SIK1P57059 783 aa24.43■■□□□ 1.5
CLK3-221ENST00000568139 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.42■■□□□ 1.5
CLK3-221ENST00000568139 PHF14O94880 888 aa24.42■■□□□ 1.5
CLK3-221ENST00000568139 SSFA2P28290 1259 aa24.42■■□□□ 1.5
CLK3-221ENST00000568139 SMIM5Q71RC9 77 aa24.42■■□□□ 1.5
CLK3-221ENST00000568139 LINC00116Q8NCU8 138 aa24.41■■□□□ 1.5
CLK3-221ENST00000568139 ATP10DQ9P241 1426 aa24.41■■□□□ 1.5
CLK3-221ENST00000568139 TMOD3Q9NYL9 352 aa24.4■■□□□ 1.5
CLK3-221ENST00000568139 POLKQ9UBT6 870 aa24.4■■□□□ 1.5
CLK3-221ENST00000568139 IFNL2Q8IZJ0 200 aa24.39■■□□□ 1.49
CLK3-221ENST00000568139 ASAP1Q9ULH1 1129 aa24.39■■□□□ 1.49
CLK3-221ENST00000568139 PHKG2P15735 406 aa24.38■■□□□ 1.49
CLK3-221ENST00000568139 ADCY9O60503 1353 aa24.38■■□□□ 1.49
CLK3-221ENST00000568139 TRIM26Q12899 539 aaPredicted RBP24.37■■□□□ 1.49
CLK3-221ENST00000568139 ITPK1Q13572 414 aa24.37■■□□□ 1.49
CLK3-221ENST00000568139 TIMELESSQ9UNS1 1208 aa24.37■■□□□ 1.49
CLK3-221ENST00000568139 IGSF1Q8N6C5 1336 aa24.36■■□□□ 1.49
CLK3-221ENST00000568139 PLEKHG2Q9H7P9 1386 aa24.35■■□□□ 1.49
CLK3-221ENST00000568139 ATP6V1AP38606 617 aa24.35■■□□□ 1.49
CLK3-221ENST00000568139 ATG3Q9NT62 314 aa24.35■■□□□ 1.49
CLK3-221ENST00000568139 GNPATO15228 680 aa24.34■■□□□ 1.49
CLK3-221ENST00000568139 EIF4A2Q14240 407 aaKnown RBP24.34■■□□□ 1.49
CLK3-221ENST00000568139 GPBP1L1Q9HC44 474 aaPredicted RBP24.34■■□□□ 1.49
CLK3-221ENST00000568139 KIF13BQ9NQT8 1826 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms