RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 PRKRIP1Q9H875 184 aaPredicted RBP16.35■□□□□ 0.21
SF3B3-208ENST00000567250 USHBP1Q8N6Y0 703 aa16.34■□□□□ 0.21
SF3B3-208ENST00000567250 NUDCQ9Y266 331 aa16.34■□□□□ 0.21
SF3B3-208ENST00000567250 ANP32CO43423 234 aa16.33■□□□□ 0.2
SF3B3-208ENST00000567250 NPM3O75607 178 aaKnown RBP16.33■□□□□ 0.2
SF3B3-208ENST00000567250 TATP17735 454 aaPredicted RBP16.33■□□□□ 0.2
SF3B3-208ENST00000567250 IL13P35225 146 aa16.33■□□□□ 0.2
SF3B3-208ENST00000567250 KDRP35968 1356 aa16.33■□□□□ 0.2
SF3B3-208ENST00000567250 EP400Q96L91 3159 aa16.33■□□□□ 0.2
SF3B3-208ENST00000567250 EXOC5O00471 708 aa16.32■□□□□ 0.2
SF3B3-208ENST00000567250 SBF2Q86WG5 1849 aa16.31■□□□□ 0.2
SF3B3-208ENST00000567250 PCDH11XQ9BZA7 1347 aa16.3■□□□□ 0.2
SF3B3-208ENST00000567250 PCDH11YQ9BZA8 1340 aa16.3■□□□□ 0.2
SF3B3-208ENST00000567250 U2SURPO15042 1029 aaKnown RBP16.3■□□□□ 0.2
SF3B3-208ENST00000567250 DOT1LQ8TEK3 1739 aa16.3■□□□□ 0.2
SF3B3-208ENST00000567250 TNS1Q9HBL0 1735 aaKnown RBP16.29■□□□□ 0.2
SF3B3-208ENST00000567250 NHSQ6T4R5 1651 aa16.29■□□□□ 0.2
SF3B3-208ENST00000567250 BCL9O00512 1426 aa16.28■□□□□ 0.2
SF3B3-208ENST00000567250 SULT6B1Q6IMI4 303 aa16.28■□□□□ 0.2
SF3B3-208ENST00000567250 ZCRB1Q8TBF4 217 aaKnown RBP16.28■□□□□ 0.2
SF3B3-208ENST00000567250 FAM196AQ6ZSG2 479 aa16.27■□□□□ 0.2
SF3B3-208ENST00000567250 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.27■□□□□ 0.21e-9■■□□□ 13.5
SF3B3-208ENST00000567250 SPG7Q9UQ90 795 aa16.27■□□□□ 0.2
SF3B3-208ENST00000567250 VIRMAQ69YN4 1812 aaKnown RBP16.26■□□□□ 0.19
SF3B3-208ENST00000567250 AMOTQ4VCS5 1084 aa16.25■□□□□ 0.19
SF3B3-208ENST00000567250 AEBP1Q8IUX7 1158 aa16.25■□□□□ 0.19
SF3B3-208ENST00000567250 RGPD3A6NKT7 1758 aaPredicted RBP16.25■□□□□ 0.19
SF3B3-208ENST00000567250 RGPD4Q7Z3J3 1758 aa16.25■□□□□ 0.19
SF3B3-208ENST00000567250 HMOX1P09601 288 aa16.24■□□□□ 0.19
SF3B3-208ENST00000567250 U2AF1L5P0DN76 240 aaPredicted RBP16.24■□□□□ 0.19
SF3B3-208ENST00000567250 U2AF1Q01081 240 aaKnown RBP eCLIP16.24■□□□□ 0.19
SF3B3-208ENST00000567250 PLEKHO1Q53GL0 409 aaPredicted RBP16.24■□□□□ 0.19
SF3B3-208ENST00000567250 TOGARAM1Q9Y4F4 1720 aa16.23■□□□□ 0.19
SF3B3-208ENST00000567250 MARCH10Q8NA82 808 aaPredicted RBP16.23■□□□□ 0.19
SF3B3-208ENST00000567250 SOCS7O14512 581 aa16.22■□□□□ 0.19
SF3B3-208ENST00000567250 NEFMP07197 916 aa16.22■□□□□ 0.19
SF3B3-208ENST00000567250 SF3B2Q13435 895 aaKnown RBP16.22■□□□□ 0.19
SF3B3-208ENST00000567250 CCDC125Q86Z20 511 aa16.22■□□□□ 0.19
SF3B3-208ENST00000567250 DDX54Q8TDD1 881 aaKnown RBP16.22■□□□□ 0.19
SF3B3-208ENST00000567250 PNNQ9H307 717 aaKnown RBP16.22■□□□□ 0.19
SF3B3-208ENST00000567250 ITGB4P16144 1822 aa16.22■□□□□ 0.19
SF3B3-208ENST00000567250 SCN11AQ9UI33 1791 aa16.21■□□□□ 0.19
SF3B3-208ENST00000567250 WDR43Q15061 677 aaKnown RBP eCLIP16.21■□□□□ 0.19
SF3B3-208ENST00000567250 FAM182BQ5T319 152 aa16.21■□□□□ 0.19
SF3B3-208ENST00000567250 BTAF1O14981 1849 aa16.21■□□□□ 0.19
SF3B3-208ENST00000567250 KAT6BQ8WYB5 2073 aa16.2■□□□□ 0.18
SF3B3-208ENST00000567250 FCHSD2O94868 740 aa16.2■□□□□ 0.18
SF3B3-208ENST00000567250 C1orf141Q5JVX7 400 aa16.2■□□□□ 0.18
SF3B3-208ENST00000567250 IFNL2Q8IZJ0 200 aa16.2■□□□□ 0.18
SF3B3-208ENST00000567250 RSPH6AQ9H0K4 717 aa16.2■□□□□ 0.18
SF3B3-208ENST00000567250 HSP90AB1P08238 724 aaKnown RBP16.19■□□□□ 0.18
SF3B3-208ENST00000567250 PRKAR2BP31323 418 aa16.19■□□□□ 0.18
SF3B3-208ENST00000567250 ZNF530Q6P9A1 599 aaPredicted RBP16.19■□□□□ 0.18
SF3B3-208ENST00000567250 ADAMTS7Q9UKP4 1686 aa16.18■□□□□ 0.18
SF3B3-208ENST00000567250 DLG5Q8TDM6 1919 aa16.18■□□□□ 0.18
SF3B3-208ENST00000567250 CYP27B1O15528 508 aa16.18■□□□□ 0.18
SF3B3-208ENST00000567250 PHKG2P15735 406 aa16.18■□□□□ 0.18
SF3B3-208ENST00000567250 GAS2L2Q8NHY3 880 aa16.18■□□□□ 0.18
SF3B3-208ENST00000567250 UPF1Q92900 1129 aaKnown RBP eCLIP16.18■□□□□ 0.18
SF3B3-208ENST00000567250 DIEXFQ68CQ4 756 aaKnown RBP16.17■□□□□ 0.18
SF3B3-208ENST00000567250 MAPK8IP3Q9UPT6 1336 aa16.17■□□□□ 0.18
SF3B3-208ENST00000567250 TRIM37O94972 964 aa16.16■□□□□ 0.18
SF3B3-208ENST00000567250 NKX1-1Q15270 411 aaPredicted RBP16.16■□□□□ 0.18
SF3B3-208ENST00000567250 MRS2Q9HD23 443 aa16.16■□□□□ 0.18
SF3B3-208ENST00000567250 RREB1Q92766 1687 aa16.15■□□□□ 0.18
SF3B3-208ENST00000567250 BAG6P46379 1132 aa16.15■□□□□ 0.18
SF3B3-208ENST00000567250 AKAP4Q5JQC9 854 aa16.15■□□□□ 0.18
SF3B3-208ENST00000567250 BCL11BQ9C0K0 894 aaPredicted RBP16.15■□□□□ 0.18
SF3B3-208ENST00000567250 MAP3K5Q99683 1374 aa16.14■□□□□ 0.17
SF3B3-208ENST00000567250 DCAF5Q96JK2 942 aa16.14■□□□□ 0.17
SF3B3-208ENST00000567250 LY75O60449 1722 aa16.14■□□□□ 0.17
SF3B3-208ENST00000567250 KDM6AO15550 1401 aaPredicted RBP16.13■□□□□ 0.17
SF3B3-208ENST00000567250 MTHFSDQ2M296 383 aaKnown RBP16.13■□□□□ 0.17
SF3B3-208ENST00000567250 SYTL4Q96C24 671 aaPredicted RBP16.13■□□□□ 0.17
SF3B3-208ENST00000567250 ACSBG1Q96GR2 724 aa16.13■□□□□ 0.17
SF3B3-208ENST00000567250 MRC1P22897 1456 aa16.13■□□□□ 0.17
SF3B3-208ENST00000567250 SIPA1L3O60292 1781 aaPredicted RBP16.11■□□□□ 0.17
SF3B3-208ENST00000567250 RNF216Q9NWF9 866 aaPredicted RBP16.11■□□□□ 0.17
SF3B3-208ENST00000567250 PAPPAQ13219 1627 aa16.11■□□□□ 0.17
SF3B3-208ENST00000567250 GNAT3A8MTJ3 354 aa16.1■□□□□ 0.17
SF3B3-208ENST00000567250 ERVV-2B6SEH9 535 aa16.1■□□□□ 0.17
SF3B3-208ENST00000567250 APBA3O96018 575 aa16.1■□□□□ 0.17
SF3B3-208ENST00000567250 PHACTR3Q96KR7 559 aa16.1■□□□□ 0.17
SF3B3-208ENST00000567250 NUP188Q5SRE5 1749 aa16.1■□□□□ 0.17
SF3B3-208ENST00000567250 PRIM1P49642 420 aaKnown RBP16.09■□□□□ 0.17
SF3B3-208ENST00000567250 RUNDC1Q96C34 613 aa16.09■□□□□ 0.17
SF3B3-208ENST00000567250 PLEKHF1Q96S99 279 aa16.09■□□□□ 0.17
SF3B3-208ENST00000567250 TMOD3Q9NYL9 352 aa16.09■□□□□ 0.17
SF3B3-208ENST00000567250 ADAMTS8Q9UP79 889 aa16.09■□□□□ 0.17
SF3B3-208ENST00000567250 CCER2I3L3R5 266 aa16.08■□□□□ 0.16
SF3B3-208ENST00000567250 KCNQ2O43526 872 aa16.08■□□□□ 0.16
SF3B3-208ENST00000567250 RTF1Q92541 710 aaKnown RBP16.08■□□□□ 0.16
SF3B3-208ENST00000567250 NFE2L2Q16236 605 aa16.07■□□□□ 0.16
SF3B3-208ENST00000567250 CCDC184Q52MB2 194 aa16.07■□□□□ 0.16
SF3B3-208ENST00000567250 MPRIPQ6WCQ1 1025 aa16.07■□□□□ 0.16
SF3B3-208ENST00000567250 ZNF831Q5JPB2 1677 aa16.07■□□□□ 0.16
SF3B3-208ENST00000567250 UBR2Q8IWV8 1755 aa16.06■□□□□ 0.16
SF3B3-208ENST00000567250 PLSCR1O15162 318 aa16.06■□□□□ 0.16
SF3B3-208ENST00000567250 RNMTO43148 476 aaKnown RBP16.06■□□□□ 0.16
SF3B3-208ENST00000567250 HTATSF1O43719 755 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms