RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 ZDHHC9Q9Y397 364 aa19.27■□□□□ 0.68
COMMD4-215ENST00000566843 THUMPD2Q9BTF0 503 aaKnown RBP19.26■□□□□ 0.67
COMMD4-215ENST00000566843 STK26Q9P289 416 aa19.26■□□□□ 0.67
COMMD4-215ENST00000566843 YTHDC2Q9H6S0 1430 aaKnown RBP19.26■□□□□ 0.67
COMMD4-215ENST00000566843 TNRQ92752 1358 aa19.26■□□□□ 0.67
COMMD4-215ENST00000566843 FER1L4A9Z1Z3 1794 aa19.26■□□□□ 0.67
COMMD4-215ENST00000566843 MINK1Q8N4C8 1332 aaPredicted RBP19.26■□□□□ 0.67
COMMD4-215ENST00000566843 ZKSCAN5Q9Y2L8 839 aa19.26■□□□□ 0.67
COMMD4-215ENST00000566843 TMEM131LA2VDJ0 1609 aa19.26■□□□□ 0.67
COMMD4-215ENST00000566843 ST18O60284 1047 aa19.25■□□□□ 0.67
COMMD4-215ENST00000566843 LRSAM1Q6UWE0 723 aa19.25■□□□□ 0.67
COMMD4-215ENST00000566843 ANKRD44Q8N8A2 993 aa19.25■□□□□ 0.67
COMMD4-215ENST00000566843 PRPF40AO75400 957 aaKnown RBP19.25■□□□□ 0.67
COMMD4-215ENST00000566843 PODXL2Q9NZ53 605 aa19.25■□□□□ 0.67
COMMD4-215ENST00000566843 ATP10DQ9P241 1426 aa19.25■□□□□ 0.67
COMMD4-215ENST00000566843 R3HCC1Q9Y3T6 440 aaKnown RBP19.25■□□□□ 0.67
COMMD4-215ENST00000566843 MYO5BQ9ULV0 1848 aa19.24■□□□□ 0.67
COMMD4-215ENST00000566843 CSPP1Q1MSJ5 1256 aa19.23■□□□□ 0.67
COMMD4-215ENST00000566843 C16orf71Q8IYS4 520 aaPredicted RBP19.23■□□□□ 0.67
COMMD4-215ENST00000566843 C8orf58Q8NAV2 365 aa19.23■□□□□ 0.67
COMMD4-215ENST00000566843 PRAM1Q96QH2 718 aa19.23■□□□□ 0.67
COMMD4-215ENST00000566843 ZGPATQ8N5A5 531 aaKnown RBP19.23■□□□□ 0.67
COMMD4-215ENST00000566843 MAP2P11137 1827 aaKnown RBP19.23■□□□□ 0.67
COMMD4-215ENST00000566843 DLG5Q8TDM6 1919 aa19.22■□□□□ 0.67
COMMD4-215ENST00000566843 SDSP20132 328 aa19.22■□□□□ 0.67
COMMD4-215ENST00000566843 RPAP2Q8IXW5 612 aaPredicted RBP19.22■□□□□ 0.67
COMMD4-215ENST00000566843 RBM27Q9P2N5 1060 aaKnown RBP19.22■□□□□ 0.67
COMMD4-215ENST00000566843 CPSF1Q10570 1443 aaKnown RBP19.22■□□□□ 0.67
COMMD4-215ENST00000566843 ELL2O00472 640 aaPredicted RBP19.22■□□□□ 0.67
COMMD4-215ENST00000566843 IL13P35225 146 aa19.22■□□□□ 0.67
COMMD4-215ENST00000566843 LMOD3Q0VAK6 560 aa19.22■□□□□ 0.67
COMMD4-215ENST00000566843 CASC1Q6TDU7 716 aa19.22■□□□□ 0.67
COMMD4-215ENST00000566843 TMEM63CQ9P1W3 806 aa19.22■□□□□ 0.67
COMMD4-215ENST00000566843 CDK19Q9BWU1 502 aa19.21■□□□□ 0.67
COMMD4-215ENST00000566843 CABP1Q9NZU7 370 aa19.21■□□□□ 0.67
COMMD4-215ENST00000566843 C3P01024 1663 aa19.21■□□□□ 0.67
COMMD4-215ENST00000566843 ATP7BP35670 1465 aa19.21■□□□□ 0.67
COMMD4-215ENST00000566843 HMOX1P09601 288 aa19.21■□□□□ 0.67
COMMD4-215ENST00000566843 CCDC39Q9UFE4 941 aa19.21■□□□□ 0.67
COMMD4-215ENST00000566843 A2ML1A8K2U0 1454 aa19.2■□□□□ 0.66
COMMD4-215ENST00000566843 REC8O95072 547 aa19.2■□□□□ 0.66
COMMD4-215ENST00000566843 XPCQ01831 940 aaPredicted RBP19.2■□□□□ 0.66
COMMD4-215ENST00000566843 RGS12O14924 1447 aa19.2■□□□□ 0.66
COMMD4-215ENST00000566843 RBM10P98175 930 aaKnown RBP19.2■□□□□ 0.66
COMMD4-215ENST00000566843 OTUD7AQ8TE49 926 aaPredicted RBP19.2■□□□□ 0.66
COMMD4-215ENST00000566843 CDK12Q9NYV4 1490 aaPredicted RBP19.19■□□□□ 0.66
COMMD4-215ENST00000566843 RIMS2Q9UQ26 1411 aa19.19■□□□□ 0.66
COMMD4-215ENST00000566843 MBD3O95983 291 aa19.19■□□□□ 0.66
COMMD4-215ENST00000566843 DYNC1I1O14576 645 aa19.18■□□□□ 0.66
COMMD4-215ENST00000566843 CEP85Q6P2H3 762 aa19.18■□□□□ 0.66
COMMD4-215ENST00000566843 UQCRHLA0A096LP55 91 aa19.18■□□□□ 0.66
COMMD4-215ENST00000566843 UQCRHP07919 91 aa19.18■□□□□ 0.66
COMMD4-215ENST00000566843 MTERF4Q7Z6M4 381 aaKnown RBP19.18■□□□□ 0.66
COMMD4-215ENST00000566843 PLEKHG5O94827 1062 aa19.17■□□□□ 0.66
COMMD4-215ENST00000566843 RIMS1Q86UR5 1692 aaKnown RBP19.17■□□□□ 0.66
COMMD4-215ENST00000566843 ERC2O15083 957 aa19.17■□□□□ 0.66
COMMD4-215ENST00000566843 FBLN1P23142 703 aa19.17■□□□□ 0.66
COMMD4-215ENST00000566843 SYCE3A1L190 88 aa19.16■□□□□ 0.66
COMMD4-215ENST00000566843 NSFL1CQ9UNZ2 370 aaKnown RBP19.16■□□□□ 0.66
COMMD4-215ENST00000566843 SASS6Q6UVJ0 657 aa19.16■□□□□ 0.66
COMMD4-215ENST00000566843 RTL1A6NKG5 1358 aa19.16■□□□□ 0.66
COMMD4-215ENST00000566843 AATKQ6ZMQ8 1374 aa19.16■□□□□ 0.66
COMMD4-215ENST00000566843 OSBPL3Q9H4L5 887 aa19.15■□□□□ 0.66
COMMD4-215ENST00000566843 FAM13BQ9NYF5 915 aa19.15■□□□□ 0.66
COMMD4-215ENST00000566843 ALKQ9UM73 1620 aa19.15■□□□□ 0.66
COMMD4-215ENST00000566843 BRD1O95696 1058 aa19.14■□□□□ 0.66
COMMD4-215ENST00000566843 MCM2P49736 904 aa19.14■□□□□ 0.65
COMMD4-215ENST00000566843 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.14■□□□□ 0.65
COMMD4-215ENST00000566843 CUL4AQ13619 759 aa19.13■□□□□ 0.65
COMMD4-215ENST00000566843 EMILIN1Q9Y6C2 1016 aa19.13■□□□□ 0.65
COMMD4-215ENST00000566843 ADAMTSL3P82987 1691 aa19.13■□□□□ 0.65
COMMD4-215ENST00000566843 SMARCA5O60264 1052 aaPredicted RBP19.13■□□□□ 0.65
COMMD4-215ENST00000566843 DLC1Q96QB1 1528 aa19.13■□□□□ 0.65
COMMD4-215ENST00000566843 HAP1P54257 671 aaPredicted RBP19.12■□□□□ 0.65
COMMD4-215ENST00000566843 TMX3Q96JJ7 454 aa19.12■□□□□ 0.65
COMMD4-215ENST00000566843 CHAMP1Q96JM3 812 aa19.12■□□□□ 0.65
COMMD4-215ENST00000566843 PRDM4Q9UKN5 801 aa19.11■□□□□ 0.65
COMMD4-215ENST00000566843 EDC4Q6P2E9 1401 aaKnown RBP19.11■□□□□ 0.65
COMMD4-215ENST00000566843 MSH6P52701 1360 aa19.11■□□□□ 0.65
COMMD4-215ENST00000566843 PTPRCP08575 1304 aa19.11■□□□□ 0.65
COMMD4-215ENST00000566843 TSPY26PQ9H489 355 aa19.11■□□□□ 0.65
COMMD4-215ENST00000566843 FAM83GA6ND36 823 aa19.1■□□□□ 0.65
COMMD4-215ENST00000566843 INTS4Q96HW7 963 aaKnown RBP19.1■□□□□ 0.65
COMMD4-215ENST00000566843 KIAA0232Q92628 1395 aa19.1■□□□□ 0.65
COMMD4-215ENST00000566843 IL17RAQ96F46 866 aa19.09■□□□□ 0.65
COMMD4-215ENST00000566843 TUBGCP6Q96RT7 1819 aa19.09■□□□□ 0.65
COMMD4-215ENST00000566843 UBR1Q8IWV7 1749 aa19.09■□□□□ 0.65
COMMD4-215ENST00000566843 NEK4P51957 841 aa19.08■□□□□ 0.65
COMMD4-215ENST00000566843 TMEM2Q9UHN6 1383 aa19.08■□□□□ 0.64
COMMD4-215ENST00000566843 PDE1AP54750 535 aa19.08■□□□□ 0.64
COMMD4-215ENST00000566843 SYAP1Q96A49 352 aaPredicted RBP19.08■□□□□ 0.64
COMMD4-215ENST00000566843 MEIS3Q99687 375 aa19.08■□□□□ 0.64
COMMD4-215ENST00000566843 ANAPC15P60006 121 aa19.07■□□□□ 0.64
COMMD4-215ENST00000566843 CHL1O00533 1208 aa19.07■□□□□ 0.64
COMMD4-215ENST00000566843 HMMRO75330 724 aa19.07■□□□□ 0.64
COMMD4-215ENST00000566843 KIAA2012Q0VF49 1180 aa19.07■□□□□ 0.64
COMMD4-215ENST00000566843 DCTN1Q14203 1278 aa19.07■□□□□ 0.64
COMMD4-215ENST00000566843 SMAP1Q8IYB5 467 aaPredicted RBP19.07■□□□□ 0.64
COMMD4-215ENST00000566843 UVSSAQ2YD98 709 aa19.06■□□□□ 0.64
COMMD4-215ENST00000566843 SALL3Q9BXA9 1300 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms