RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PROM2Q8N271 834 aa23.15■■□□□ 1.3
CLK3-210ENST00000563112 MEGF6O75095 1541 aa23.13■■□□□ 1.29
CLK3-210ENST00000563112 MAP2P11137 1827 aaKnown RBP23.12■■□□□ 1.29
CLK3-210ENST00000563112 WASHC2AQ641Q2 1341 aa23.12■■□□□ 1.29
CLK3-210ENST00000563112 STK32BQ9NY57 414 aa23.12■■□□□ 1.29
CLK3-210ENST00000563112 TNNT2P45379 298 aaPredicted RBP23.11■■□□□ 1.29
CLK3-210ENST00000563112 POLKQ9UBT6 870 aa23.11■■□□□ 1.29
CLK3-210ENST00000563112 ANKRD26Q9UPS8 1709 aa23.11■■□□□ 1.29
CLK3-210ENST00000563112 SYTL4Q96C24 671 aaPredicted RBP23.1■■□□□ 1.29
CLK3-210ENST00000563112 ANO8Q9HCE9 1232 aaPredicted RBP23.1■■□□□ 1.29
CLK3-210ENST00000563112 NSD2O96028 1365 aa23.1■■□□□ 1.29
CLK3-210ENST00000563112 KNSTRNQ9Y448 316 aa23.09■■□□□ 1.29
CLK3-210ENST00000563112 BTAF1O14981 1849 aa23.09■■□□□ 1.29
CLK3-210ENST00000563112 PRIM1P49642 420 aaKnown RBP23.08■■□□□ 1.29
CLK3-210ENST00000563112 SPON1Q9HCB6 807 aa23.07■■□□□ 1.28
CLK3-210ENST00000563112 PCDH11XQ9BZA7 1347 aa23.07■■□□□ 1.28
CLK3-210ENST00000563112 PCDH11YQ9BZA8 1340 aa23.07■■□□□ 1.28
CLK3-210ENST00000563112 SLC15A2Q16348 729 aa23.06■■□□□ 1.28
CLK3-210ENST00000563112 MORC1Q86VD1 984 aa23.06■■□□□ 1.28
CLK3-210ENST00000563112 KIF7Q2M1P5 1343 aa23.05■■□□□ 1.28
CLK3-210ENST00000563112 SHANK3Q9BYB0 1731 aa23.05■■□□□ 1.28
CLK3-210ENST00000563112 EYA1Q99502 592 aa23.04■■□□□ 1.28
CLK3-210ENST00000563112 DOT1LQ8TEK3 1739 aa23.03■■□□□ 1.28
CLK3-210ENST00000563112 SLC27A3Q5K4L6 730 aa23.03■■□□□ 1.28
CLK3-210ENST00000563112 PPP1R1BQ9UD71 204 aaPredicted RBP23.02■■□□□ 1.28
CLK3-210ENST00000563112 SPG7Q9UQ90 795 aa23.02■■□□□ 1.28
CLK3-210ENST00000563112 EIF4A2Q14240 407 aaKnown RBP23.01■■□□□ 1.27
CLK3-210ENST00000563112 NCAPD2Q15021 1401 aa23■■□□□ 1.27
CLK3-210ENST00000563112 CYP27B1O15528 508 aa22.98■■□□□ 1.27
CLK3-210ENST00000563112 LRRC4BQ9NT99 713 aa22.98■■□□□ 1.27
CLK3-210ENST00000563112 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLK3-210ENST00000563112 CASZ1Q86V15 1759 aa22.96■■□□□ 1.27
CLK3-210ENST00000563112 ZBTB7AO95365 584 aa22.96■■□□□ 1.27
CLK3-210ENST00000563112 PDGFDQ9GZP0 370 aaPredicted RBP22.96■■□□□ 1.27
CLK3-210ENST00000563112 AMER1Q5JTC6 1135 aaPredicted RBP22.95■■□□□ 1.26
CLK3-210ENST00000563112 PKD1L3Q7Z443 1732 aa22.95■■□□□ 1.26
CLK3-210ENST00000563112 PAPPAQ13219 1627 aa22.94■■□□□ 1.26
CLK3-210ENST00000563112 MPRIPQ6WCQ1 1025 aa22.94■■□□□ 1.26
CLK3-210ENST00000563112 CCNL1Q9UK58 526 aaPredicted RBP22.94■■□□□ 1.26
CLK3-210ENST00000563112 IGSF1Q8N6C5 1336 aa22.93■■□□□ 1.26
CLK3-210ENST00000563112 HMGB2P26583 209 aaKnown RBP22.93■■□□□ 1.26
CLK3-210ENST00000563112 NKX1-1Q15270 411 aaPredicted RBP22.93■■□□□ 1.26
CLK3-210ENST00000563112 ZNF827Q17R98 1081 aa22.93■■□□□ 1.26
CLK3-210ENST00000563112 ATF5Q9Y2D1 282 aaPredicted RBP22.93■■□□□ 1.26
CLK3-210ENST00000563112 IFNL2Q8IZJ0 200 aa22.92■■□□□ 1.26
CLK3-210ENST00000563112 AKT1S1Q96B36 256 aa22.92■■□□□ 1.26
CLK3-210ENST00000563112 MTFR1LQ9H019 292 aa22.92■■□□□ 1.26
CLK3-210ENST00000563112 LY75O60449 1722 aa22.91■■□□□ 1.26
CLK3-210ENST00000563112 PLEKHG2Q9H7P9 1386 aa22.91■■□□□ 1.26
CLK3-210ENST00000563112 KCNQ4P56696 695 aa22.91■■□□□ 1.26
CLK3-210ENST00000563112 SMARCC1Q92922 1105 aaPredicted RBP22.9■■□□□ 1.26
CLK3-210ENST00000563112 TFCP2L1Q9NZI6 479 aa22.9■■□□□ 1.26
CLK3-210ENST00000563112 PER1O15534 1290 aaPredicted RBP22.89■■□□□ 1.25
CLK3-210ENST00000563112 PHKG2P15735 406 aa22.88■■□□□ 1.25
CLK3-210ENST00000563112 PLEKHO1Q53GL0 409 aaPredicted RBP22.88■■□□□ 1.25
CLK3-210ENST00000563112 CC2D1BQ5T0F9 858 aaKnown RBP22.87■■□□□ 1.25
CLK3-210ENST00000563112 SLC16A10Q8TF71 515 aa22.87■■□□□ 1.25
CLK3-210ENST00000563112 PALLDQ8WX93 1383 aa22.87■■□□□ 1.25
CLK3-210ENST00000563112 ITGB4P16144 1822 aa22.87■■□□□ 1.25
CLK3-210ENST00000563112 DCAF8L1A6NGE4 600 aa22.86■■□□□ 1.25
CLK3-210ENST00000563112 PTGER2P43116 358 aa22.86■■□□□ 1.25
CLK3-210ENST00000563112 AMOTQ4VCS5 1084 aa22.86■■□□□ 1.25
CLK3-210ENST00000563112 PIGBQ92521 554 aa22.86■■□□□ 1.25
CLK3-210ENST00000563112 TMOD3Q9NYL9 352 aa22.86■■□□□ 1.25
CLK3-210ENST00000563112 HSP90AB1P08238 724 aaKnown RBP22.85■■□□□ 1.25
CLK3-210ENST00000563112 TOGARAM1Q9Y4F4 1720 aa22.85■■□□□ 1.25
CLK3-210ENST00000563112 IL13P35225 146 aa22.84■■□□□ 1.25
CLK3-210ENST00000563112 MTHFSP49914 203 aa22.84■■□□□ 1.25
CLK3-210ENST00000563112 PNPLA7Q6ZV29 1317 aa22.83■■□□□ 1.25
CLK3-210ENST00000563112 QSER1Q2KHR3 1735 aa22.83■■□□□ 1.25
CLK3-210ENST00000563112 SULT6B1Q6IMI4 303 aa22.83■■□□□ 1.25
CLK3-210ENST00000563112 ZNF530Q6P9A1 599 aaPredicted RBP22.82■■□□□ 1.24
CLK3-210ENST00000563112 AEBP1Q8IUX7 1158 aa22.82■■□□□ 1.24
CLK3-210ENST00000563112 NPC1L1Q9UHC9 1359 aa22.81■■□□□ 1.24
CLK3-210ENST00000563112 DCAF5Q96JK2 942 aa22.81■■□□□ 1.24
CLK3-210ENST00000563112 MSH5O43196 834 aa22.8■■□□□ 1.24
CLK3-210ENST00000563112 CNGB1Q14028 1251 aaPredicted RBP22.8■■□□□ 1.24
CLK3-210ENST00000563112 C1orf141Q5JVX7 400 aa22.8■■□□□ 1.24
CLK3-210ENST00000563112 ARXQ96QS3 562 aa22.8■■□□□ 1.24
CLK3-210ENST00000563112 ERVV-2B6SEH9 535 aa22.79■■□□□ 1.24
CLK3-210ENST00000563112 POLD1P28340 1107 aa22.79■■□□□ 1.24
CLK3-210ENST00000563112 SGIP1Q9BQI5 828 aa22.79■■□□□ 1.24
CLK3-210ENST00000563112 C5P01031 1676 aa22.78■■□□□ 1.24
CLK3-210ENST00000563112 FLAD1Q8NFF5 587 aa22.78■■□□□ 1.24
CLK3-210ENST00000563112 KDRP35968 1356 aa22.77■■□□□ 1.24
CLK3-210ENST00000563112 DIAPH1O60610 1272 aaKnown RBP22.77■■□□□ 1.24
CLK3-210ENST00000563112 TUBGCP6Q96RT7 1819 aa22.77■■□□□ 1.24
CLK3-210ENST00000563112 LOC102724428A0A0B4J2F2 783 aa22.76■■□□□ 1.23
CLK3-210ENST00000563112 SIK1P57059 783 aa22.76■■□□□ 1.23
CLK3-210ENST00000563112 AK7Q96M32 723 aa22.76■■□□□ 1.23
CLK3-210ENST00000563112 FHDC1Q9C0D6 1143 aaPredicted RBP22.76■■□□□ 1.23
CLK3-210ENST00000563112 ASAP1Q9ULH1 1129 aa22.76■■□□□ 1.23
CLK3-210ENST00000563112 CABP4P57796 275 aa22.75■■□□□ 1.23
CLK3-210ENST00000563112 COL23A1Q86Y22 540 aaPredicted RBP22.75■■□□□ 1.23
CLK3-210ENST00000563112 SYT17Q9BSW7 474 aa22.75■■□□□ 1.23
CLK3-210ENST00000563112 TAF1LQ8IZX4 1826 aa22.75■■□□□ 1.23
CLK3-210ENST00000563112 ATG3Q9NT62 314 aa22.74■■□□□ 1.23
CLK3-210ENST00000563112 ATP6V1AP38606 617 aa22.73■■□□□ 1.23
CLK3-210ENST00000563112 HMOX1P09601 288 aa22.72■■□□□ 1.23
CLK3-210ENST00000563112 C4BP0C0L5 1744 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms