RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 MCM10Q7L590 875 aa13.98□□□□□ -0.17
CUX1-218ENST00000560541 ATP7BP35670 1465 aa13.98□□□□□ -0.17
CUX1-218ENST00000560541 SULT6B1Q6IMI4 303 aa13.97□□□□□ -0.17
CUX1-218ENST00000560541 LMOD3Q0VAK6 560 aa13.97□□□□□ -0.17
CUX1-218ENST00000560541 EDC4Q6P2E9 1401 aaKnown RBP13.96□□□□□ -0.17
CUX1-218ENST00000560541 ANP32BQ92688 251 aaKnown RBP13.96□□□□□ -0.17
CUX1-218ENST00000560541 AK9Q5TCS8 1911 aa13.96□□□□□ -0.17
CUX1-218ENST00000560541 MIS18AQ9NYP9 233 aa13.95□□□□□ -0.18
CUX1-218ENST00000560541 METP08581 1390 aa13.95□□□□□ -0.18
CUX1-218ENST00000560541 DCTPP1Q9H773 170 aa13.95□□□□□ -0.18
CUX1-218ENST00000560541 CPS1P31327 1500 aa13.95□□□□□ -0.18
CUX1-218ENST00000560541 TTC22Q5TAA0 569 aa13.95□□□□□ -0.18
CUX1-218ENST00000560541 ZFP91Q96JP5 570 aaPredicted RBP13.95□□□□□ -0.18
CUX1-218ENST00000560541 DLG5Q8TDM6 1919 aa13.95□□□□□ -0.18
CUX1-218ENST00000560541 CPSF1Q10570 1443 aaKnown RBP13.94□□□□□ -0.18
CUX1-218ENST00000560541 CDK12Q9NYV4 1490 aaPredicted RBP13.94□□□□□ -0.18
CUX1-218ENST00000560541 KNDC1Q76NI1 1749 aa13.94□□□□□ -0.18
CUX1-218ENST00000560541 PKP1Q13835 747 aa13.94□□□□□ -0.18
CUX1-218ENST00000560541 MEIS3Q99687 375 aa13.94□□□□□ -0.18
CUX1-218ENST00000560541 CCDC61Q9Y6R9 512 aa13.94□□□□□ -0.18
CUX1-218ENST00000560541 CYB5RLQ6IPT4 315 aa13.93□□□□□ -0.18
CUX1-218ENST00000560541 DDX49Q9Y6V7 483 aaKnown RBP13.93□□□□□ -0.18
CUX1-218ENST00000560541 A2ML1A8K2U0 1454 aa13.93□□□□□ -0.18
CUX1-218ENST00000560541 EIF4A2Q14240 407 aaKnown RBP13.93□□□□□ -0.18
CUX1-218ENST00000560541 TRIM44Q96DX7 344 aaPredicted RBP13.93□□□□□ -0.18
CUX1-218ENST00000560541 MSH6P52701 1360 aa13.93□□□□□ -0.18
CUX1-218ENST00000560541 BAG4O95429 457 aaKnown RBP13.93□□□□□ -0.18
CUX1-218ENST00000560541 NCLP19338 710 aaKnown RBP13.93□□□□□ -0.18
CUX1-218ENST00000560541 SDSP20132 328 aa13.93□□□□□ -0.18
CUX1-218ENST00000560541 TMEM51Q9NW97 253 aa13.93□□□□□ -0.18
CUX1-218ENST00000560541 SKOR2Q2VWA4 1001 aaPredicted RBP13.92□□□□□ -0.18
CUX1-218ENST00000560541 MCTP1Q6DN14 999 aa13.92□□□□□ -0.18
CUX1-218ENST00000560541 CEP85Q6P2H3 762 aa13.92□□□□□ -0.18
CUX1-218ENST00000560541 SLC4A10Q6U841 1118 aa13.92□□□□□ -0.18
CUX1-218ENST00000560541 GOLGA6L22H0YM25 854 aa13.92□□□□□ -0.18
CUX1-218ENST00000560541 PPP4R3BQ5MIZ7 849 aa13.92□□□□□ -0.18
CUX1-218ENST00000560541 SMAP1Q8IYB5 467 aaPredicted RBP13.92□□□□□ -0.18
CUX1-218ENST00000560541 ANKRD44Q8N8A2 993 aa13.92□□□□□ -0.18
CUX1-218ENST00000560541 FAM69CQ0P6D2 419 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 INTS3Q68E01 1043 aaKnown RBP13.91□□□□□ -0.18
CUX1-218ENST00000560541 USP26Q9BXU7 913 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 RABEP1Q15276 862 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 HSP90AB2PQ58FF8 381 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 ATP10DQ9P241 1426 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 AATKQ6ZMQ8 1374 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 PRR36Q9H6K5 1346 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 F6X3S4 739 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 TSHZ3Q63HK5 1081 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 CHAMP1Q96JM3 812 aa13.91□□□□□ -0.18
CUX1-218ENST00000560541 SLC4A2P04920 1241 aa13.9□□□□□ -0.18
CUX1-218ENST00000560541 FOXO3O43524 673 aa13.9□□□□□ -0.18
CUX1-218ENST00000560541 ZGPATQ8N5A5 531 aaKnown RBP13.9□□□□□ -0.18
CUX1-218ENST00000560541 RIMBP3CA6NJZ7 1639 aa13.9□□□□□ -0.19
CUX1-218ENST00000560541 RIMBP3BA6NNM3 1639 aa13.9□□□□□ -0.19
CUX1-218ENST00000560541 RIMBP3Q9UFD9 1639 aa13.9□□□□□ -0.19
CUX1-218ENST00000560541 ZBTB22O15209 634 aa13.89□□□□□ -0.19
CUX1-218ENST00000560541 ISY1Q9ULR0 285 aaKnown RBP13.89□□□□□ -0.19
CUX1-218ENST00000560541 DLC1Q96QB1 1528 aa13.89□□□□□ -0.19
CUX1-218ENST00000560541 RGS12O14924 1447 aa13.89□□□□□ -0.19
CUX1-218ENST00000560541 FOXD4L5Q5VV16 416 aaPredicted RBP13.89□□□□□ -0.19
CUX1-218ENST00000560541 FOXD4L4Q8WXT5 416 aaPredicted RBP13.89□□□□□ -0.19
CUX1-218ENST00000560541 RTL1A6NKG5 1358 aa13.89□□□□□ -0.19
CUX1-218ENST00000560541 CHL1O00533 1208 aa13.88□□□□□ -0.19
CUX1-218ENST00000560541 CAVIN1Q6NZI2 390 aaKnown RBP13.88□□□□□ -0.19
CUX1-218ENST00000560541 G2E3Q7L622 706 aa13.88□□□□□ -0.19
CUX1-218ENST00000560541 NASPP49321 788 aaPredicted RBP13.88□□□□□ -0.19
CUX1-218ENST00000560541 RPAP2Q8IXW5 612 aaPredicted RBP13.88□□□□□ -0.19
CUX1-218ENST00000560541 CHMP4AQ9BY43 222 aa13.88□□□□□ -0.19
CUX1-218ENST00000560541 KLHL40Q2TBA0 621 aa13.87□□□□□ -0.19
CUX1-218ENST00000560541 CASC1Q6TDU7 716 aa13.87□□□□□ -0.19
CUX1-218ENST00000560541 R3HCC1Q9Y3T6 440 aaKnown RBP13.87□□□□□ -0.19
CUX1-218ENST00000560541 PTMSP20962 102 aa13.86□□□□□ -0.19
CUX1-218ENST00000560541 NECTIN2Q92692 538 aa13.86□□□□□ -0.19
CUX1-218ENST00000560541 SETD1AO15047 1707 aaKnown RBP13.86□□□□□ -0.19
CUX1-218ENST00000560541 EXOC6BQ9Y2D4 811 aa13.86□□□□□ -0.19
CUX1-218ENST00000560541 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.85□□□□□ -0.19
CUX1-218ENST00000560541 TTC21BQ7Z4L5 1316 aa13.85□□□□□ -0.19
CUX1-218ENST00000560541 KIF24Q5T7B8 1368 aa13.85□□□□□ -0.19
CUX1-218ENST00000560541 NOL8Q76FK4 1167 aaKnown RBP13.85□□□□□ -0.19
CUX1-218ENST00000560541 ACEP12821 1306 aa13.85□□□□□ -0.19
CUX1-218ENST00000560541 ST18O60284 1047 aa13.85□□□□□ -0.19
CUX1-218ENST00000560541 PRPF40AO75400 957 aaKnown RBP13.85□□□□□ -0.19
CUX1-218ENST00000560541 TSPYL4Q9UJ04 414 aa13.85□□□□□ -0.19
CUX1-218ENST00000560541 TSPOAP1O95153 1857 aa13.84□□□□□ -0.19
CUX1-218ENST00000560541 NUCB2P80303 420 aa13.84□□□□□ -0.19
CUX1-218ENST00000560541 SECISBP2LQ93073 1101 aaKnown RBP13.84□□□□□ -0.19
CUX1-218ENST00000560541 RBM27Q9P2N5 1060 aaKnown RBP13.84□□□□□ -0.19
CUX1-218ENST00000560541 ESF1Q9H501 851 aaKnown RBP13.84□□□□□ -0.19
CUX1-218ENST00000560541 LMBRD1Q9NUN5 540 aa13.83□□□□□ -0.19
CUX1-218ENST00000560541 PTPRCP08575 1304 aa13.83□□□□□ -0.19
CUX1-218ENST00000560541 NRXN3Q9Y4C0 1643 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 HAP1P54257 671 aaPredicted RBP13.83□□□□□ -0.2
CUX1-218ENST00000560541 DMTNQ08495 405 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 ROBO2Q9HCK4 1378 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 ERC2O15083 957 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 REC8O95072 547 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 MTHFSDQ2M296 383 aaKnown RBP13.83□□□□□ -0.2
CUX1-218ENST00000560541 ZSCAN23Q3MJ62 389 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 CLEC17AQ6ZS10 378 aa13.83□□□□□ -0.2
CUX1-218ENST00000560541 MAP3K19Q56UN5 1328 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms