RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PNPLA7Q6ZV29 1317 aa16.17■□□□□ 0.18
LDLR-212ENST00000560467 PRIM1P49642 420 aaKnown RBP16.16■□□□□ 0.18
LDLR-212ENST00000560467 SLC27A3Q5K4L6 730 aa16.16■□□□□ 0.18
LDLR-212ENST00000560467 NSD2O96028 1365 aa16.15■□□□□ 0.18
LDLR-212ENST00000560467 HOXC9P31274 260 aa16.15■□□□□ 0.18
LDLR-212ENST00000560467 GPR162Q16538 588 aa16.15■□□□□ 0.18
LDLR-212ENST00000560467 DIEXFQ68CQ4 756 aaKnown RBP16.15■□□□□ 0.18
LDLR-212ENST00000560467 COG3Q96JB2 828 aa16.14■□□□□ 0.17
LDLR-212ENST00000560467 PUS7Q96PZ0 661 aaKnown RBP16.14■□□□□ 0.17
LDLR-212ENST00000560467 TESK2Q96S53 571 aa16.14■□□□□ 0.17
LDLR-212ENST00000560467 TFCP2L1Q9NZI6 479 aa16.14■□□□□ 0.17
LDLR-212ENST00000560467 MEGF6O75095 1541 aa16.14■□□□□ 0.17
LDLR-212ENST00000560467 ANKRD36BQ8N2N9 1353 aa16.13■□□□□ 0.17
LDLR-212ENST00000560467 POLD1P28340 1107 aa16.13■□□□□ 0.17
LDLR-212ENST00000560467 AMPHP49418 695 aa16.13■□□□□ 0.17
LDLR-212ENST00000560467 SLC16A10Q8TF71 515 aa16.13■□□□□ 0.17
LDLR-212ENST00000560467 DDX10Q13206 875 aaKnown RBP16.12■□□□□ 0.17
LDLR-212ENST00000560467 PELP1Q8IZL8 1130 aaKnown RBP16.12■□□□□ 0.17
LDLR-212ENST00000560467 NLGN2Q8NFZ4 835 aa16.12■□□□□ 0.17
LDLR-212ENST00000560467 USHBP1Q8N6Y0 703 aa16.11■□□□□ 0.17
LDLR-212ENST00000560467 ZCRB1Q8TBF4 217 aaKnown RBP16.11■□□□□ 0.17
LDLR-212ENST00000560467 FAM208AQ9UK61 1670 aaKnown RBP16.11■□□□□ 0.17
LDLR-212ENST00000560467 SENP3-EIF4A1A0A087X0R7 540 aa16.1■□□□□ 0.17
LDLR-212ENST00000560467 RRS1Q15050 365 aaKnown RBP16.1■□□□□ 0.17
LDLR-212ENST00000560467 CCNL1Q9UK58 526 aaPredicted RBP16.1■□□□□ 0.17
LDLR-212ENST00000560467 C1QTNF8P60827 252 aa16.09■□□□□ 0.17
LDLR-212ENST00000560467 NBPF6Q5VWK0 638 aa16.09■□□□□ 0.17
LDLR-212ENST00000560467 NBPF4Q96M43 638 aa16.09■□□□□ 0.17
LDLR-212ENST00000560467 KIF7Q2M1P5 1343 aa16.09■□□□□ 0.17
LDLR-212ENST00000560467 WASHC2AQ641Q2 1341 aa16.09■□□□□ 0.17
LDLR-212ENST00000560467 RTL1A6NKG5 1358 aa16.08■□□□□ 0.16
LDLR-212ENST00000560467 DOT1LQ8TEK3 1739 aa16.08■□□□□ 0.16
LDLR-212ENST00000560467 KAT6BQ8WYB5 2073 aa16.07■□□□□ 0.16
LDLR-212ENST00000560467 MSL1Q68DK7 614 aa16.07■□□□□ 0.16
LDLR-212ENST00000560467 GGNBP2Q9H3C7 697 aa16.07■□□□□ 0.16
LDLR-212ENST00000560467 GOLGB1Q14789 3259 aaKnown RBP16.06■□□□□ 0.16
LDLR-212ENST00000560467 MSH5O43196 834 aa16.06■□□□□ 0.16
LDLR-212ENST00000560467 COL23A1Q86Y22 540 aaPredicted RBP16.06■□□□□ 0.16
LDLR-212ENST00000560467 YBX3P16989 372 aaKnown RBP eCLIP16.05■□□□□ 0.16
LDLR-212ENST00000560467 TUBGCP6Q96RT7 1819 aa16.05■□□□□ 0.16
LDLR-212ENST00000560467 QSER1Q2KHR3 1735 aa16.05■□□□□ 0.16
LDLR-212ENST00000560467 SHANK3Q9BYB0 1731 aa16.05■□□□□ 0.16
LDLR-212ENST00000560467 FYB1O15117 783 aa16.04■□□□□ 0.16
LDLR-212ENST00000560467 RAPGEF4Q8WZA2 1011 aa16.04■□□□□ 0.16
LDLR-212ENST00000560467 GIGYF1O75420 1035 aaPredicted RBP16.03■□□□□ 0.16
LDLR-212ENST00000560467 SMG6Q86US8 1419 aaKnown RBP16.02■□□□□ 0.16
LDLR-212ENST00000560467 LY75O60449 1722 aa16.02■□□□□ 0.16
LDLR-212ENST00000560467 COL24A1Q17RW2 1714 aa16.02■□□□□ 0.16
LDLR-212ENST00000560467 CHD4Q14839 1912 aa16.02■□□□□ 0.16
LDLR-212ENST00000560467 CGNL1Q0VF96 1302 aa16.02■□□□□ 0.16
LDLR-212ENST00000560467 ANP32CO43423 234 aa16.02■□□□□ 0.16
LDLR-212ENST00000560467 TATP17735 454 aaPredicted RBP16.02■□□□□ 0.16
LDLR-212ENST00000560467 HSP90AB2PQ58FF8 381 aa16.02■□□□□ 0.16
LDLR-212ENST00000560467 PALLDQ8WX93 1383 aa16.01■□□□□ 0.15
LDLR-212ENST00000560467 RGPD2P0DJD1 1756 aa16.01■□□□□ 0.15
LDLR-212ENST00000560467 PCDH11XQ9BZA7 1347 aa16■□□□□ 0.15
LDLR-212ENST00000560467 PCDH11YQ9BZA8 1340 aa16■□□□□ 0.15
LDLR-212ENST00000560467 INSRP06213 1382 aa16■□□□□ 0.15
LDLR-212ENST00000560467 CYP27B1O15528 508 aa15.99■□□□□ 0.15
LDLR-212ENST00000560467 MPRIPQ6WCQ1 1025 aa15.99■□□□□ 0.15
LDLR-212ENST00000560467 AMIGO3Q86WK7 504 aa15.99■□□□□ 0.15
LDLR-212ENST00000560467 FLT4P35916 1363 aa15.99■□□□□ 0.15
LDLR-212ENST00000560467 GRIN3BO60391 1043 aa15.98■□□□□ 0.15
LDLR-212ENST00000560467 SMIM5Q71RC9 77 aa15.97■□□□□ 0.15
LDLR-212ENST00000560467 EMILIN1Q9Y6C2 1016 aa15.97■□□□□ 0.15
LDLR-212ENST00000560467 PANK3Q9H999 370 aa15.96■□□□□ 0.15
LDLR-212ENST00000560467 KNSTRNQ9Y448 316 aa15.96■□□□□ 0.15
LDLR-212ENST00000560467 ATP10DQ9P241 1426 aa15.95■□□□□ 0.14
LDLR-212ENST00000560467 CARD14Q9BXL6 1004 aa15.95■□□□□ 0.14
LDLR-212ENST00000560467 CD2APQ9Y5K6 639 aa15.95■□□□□ 0.14
LDLR-212ENST00000560467 PHF14O94880 888 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 FLAD1Q8NFF5 587 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 PIGBQ92521 554 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 AK7Q96M32 723 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 WWC3Q9ULE0 1092 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 KIF24Q5T7B8 1368 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 C5P01031 1676 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 NSD3Q9BZ95 1437 aa15.94■□□□□ 0.14
LDLR-212ENST00000560467 SMARCC1Q92922 1105 aaPredicted RBP15.93■□□□□ 0.14
LDLR-212ENST00000560467 TOGARAM1Q9Y4F4 1720 aa15.92■□□□□ 0.14
LDLR-212ENST00000560467 PPM1GO15355 546 aaPredicted RBP15.92■□□□□ 0.14
LDLR-212ENST00000560467 NCAPD2Q15021 1401 aa15.92■□□□□ 0.14
LDLR-212ENST00000560467 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.91■□□□□ 0.14
LDLR-212ENST00000560467 LINC00116Q8NCU8 138 aa15.91■□□□□ 0.14
LDLR-212ENST00000560467 CEP350Q5VT06 3117 aa15.9■□□□□ 0.14
LDLR-212ENST00000560467 C4BP0C0L5 1744 aa15.9■□□□□ 0.14
LDLR-212ENST00000560467 IGSF1Q8N6C5 1336 aa15.9■□□□□ 0.14
LDLR-212ENST00000560467 ADCY9O60503 1353 aa15.89■□□□□ 0.13
LDLR-212ENST00000560467 LOC102724428A0A0B4J2F2 783 aa15.89■□□□□ 0.13
LDLR-212ENST00000560467 SIK1P57059 783 aa15.89■□□□□ 0.13
LDLR-212ENST00000560467 NKX1-1Q15270 411 aaPredicted RBP15.89■□□□□ 0.13
LDLR-212ENST00000560467 ZNF526Q8TF50 670 aaPredicted RBP15.89■□□□□ 0.13
LDLR-212ENST00000560467 KIF20BQ96Q89 1820 aa15.89■□□□□ 0.13
LDLR-212ENST00000560467 HMGB2P26583 209 aaKnown RBP15.88■□□□□ 0.13
LDLR-212ENST00000560467 ITPK1Q13572 414 aa15.88■□□□□ 0.13
LDLR-212ENST00000560467 EYA1Q99502 592 aa15.88■□□□□ 0.13
LDLR-212ENST00000560467 GPBP1L1Q9HC44 474 aaPredicted RBP15.88■□□□□ 0.13
LDLR-212ENST00000560467 ASAP1Q9ULH1 1129 aa15.88■□□□□ 0.13
LDLR-212ENST00000560467 SPG7Q9UQ90 795 aa15.88■□□□□ 0.13
LDLR-212ENST00000560467 SSFA2P28290 1259 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms