RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 SLIT2O94813 1529 aa15.95■□□□□ 0.14
HERC1-205ENST00000559886 LRP6O75581 1613 aa15.95■□□□□ 0.14
HERC1-205ENST00000559886 MEGF6O75095 1541 aa15.94■□□□□ 0.14
HERC1-205ENST00000559886 PLEKHO1Q53GL0 409 aaPredicted RBP15.94■□□□□ 0.14
HERC1-205ENST00000559886 PARP4Q9UKK3 1724 aaKnown RBP15.94■□□□□ 0.14
HERC1-205ENST00000559886 IL16Q14005 1332 aa15.94■□□□□ 0.14
HERC1-205ENST00000559886 PKD1L3Q7Z443 1732 aa15.94■□□□□ 0.14
HERC1-205ENST00000559886 TATP17735 454 aaPredicted RBP15.93■□□□□ 0.14
HERC1-205ENST00000559886 DUSP27Q5VZP5 1158 aa15.93■□□□□ 0.14
HERC1-205ENST00000559886 HTATSF1O43719 755 aaKnown RBP15.92■□□□□ 0.14
HERC1-205ENST00000559886 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.92■□□□□ 0.141e-6■■■■□ 22.3
HERC1-205ENST00000559886 GNAT3A8MTJ3 354 aa15.92■□□□□ 0.14
HERC1-205ENST00000559886 CALD1Q05682 793 aaKnown RBP15.92■□□□□ 0.14
HERC1-205ENST00000559886 MAP3K5Q99683 1374 aa15.92■□□□□ 0.14
HERC1-205ENST00000559886 VIRMAQ69YN4 1812 aaKnown RBP15.91■□□□□ 0.14
HERC1-205ENST00000559886 OVOS2A0A0G2JMS6 1433 aa15.91■□□□□ 0.14
HERC1-205ENST00000559886 THUMPD2Q9BTF0 503 aaKnown RBP15.91■□□□□ 0.14
HERC1-205ENST00000559886 DCTN1Q14203 1278 aa15.9■□□□□ 0.14
HERC1-205ENST00000559886 RTF1Q92541 710 aaKnown RBP15.9■□□□□ 0.14
HERC1-205ENST00000559886 ZNF530Q6P9A1 599 aaPredicted RBP15.9■□□□□ 0.14
HERC1-205ENST00000559886 NGLY1Q96IV0 654 aa15.9■□□□□ 0.14
HERC1-205ENST00000559886 C8orf37Q96NL8 207 aa15.9■□□□□ 0.14
HERC1-205ENST00000559886 WNK3Q9BYP7 1800 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 LRRC37A3O60309 1634 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 AKAP4Q5JQC9 854 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 MCM10Q7L590 875 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 FNBP4Q8N3X1 1017 aaPredicted RBP15.89■□□□□ 0.13
HERC1-205ENST00000559886 MYH16Q9H6N6 1097 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 SPG7Q9UQ90 795 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 IL2RBP14784 551 aa15.89■□□□□ 0.13
HERC1-205ENST00000559886 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.89■□□□□ 0.13
HERC1-205ENST00000559886 BCL9LQ86UU0 1499 aa15.88■□□□□ 0.13
HERC1-205ENST00000559886 UNC5CLQ8IV45 518 aa15.88■□□□□ 0.13
HERC1-205ENST00000559886 USP35Q9P2H5 1018 aa15.88■□□□□ 0.13
HERC1-205ENST00000559886 ZNF853P0CG23 659 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 C1orf141Q5JVX7 400 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 IFT57Q9NWB7 429 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 SHANK3Q9BYB0 1731 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 ADAMTS7Q9UKP4 1686 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 SPATA31A1Q5TZJ5 1347 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 GNAI1P63096 354 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 IL17REQ8NFR9 667 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 DISP2A7MBM2 1401 aa15.87■□□□□ 0.13
HERC1-205ENST00000559886 FANCIQ9NVI1 1328 aa15.86■□□□□ 0.13
HERC1-205ENST00000559886 CFAP44Q96MT7 982 aa15.86■□□□□ 0.13
HERC1-205ENST00000559886 CEMIPQ8WUJ3 1361 aa15.86■□□□□ 0.13
HERC1-205ENST00000559886 SPATA31A5Q5VU36 1347 aa15.86■□□□□ 0.13
HERC1-205ENST00000559886 SPATA31A7Q8IWB4 1347 aa15.86■□□□□ 0.13
HERC1-205ENST00000559886 SCN11AQ9UI33 1791 aa15.86■□□□□ 0.13
HERC1-205ENST00000559886 MEX3CQ5U5Q3 659 aaKnown RBP15.85■□□□□ 0.13
HERC1-205ENST00000559886 ZCRB1Q8TBF4 217 aaKnown RBP15.85■□□□□ 0.13
HERC1-205ENST00000559886 THRAP3Q9Y2W1 955 aaKnown RBP15.85■□□□□ 0.13
HERC1-205ENST00000559886 PHKG2P15735 406 aa15.85■□□□□ 0.13
HERC1-205ENST00000559886 TSR2Q969E8 191 aaKnown RBP15.85■□□□□ 0.13
HERC1-205ENST00000559886 CYP27B1O15528 508 aa15.84■□□□□ 0.13
HERC1-205ENST00000559886 IFNL2Q8IZJ0 200 aa15.84■□□□□ 0.13
HERC1-205ENST00000559886 LAS1LQ9Y4W2 734 aaKnown RBP15.84■□□□□ 0.13
HERC1-205ENST00000559886 VPS72Q15906 364 aa15.84■□□□□ 0.13
HERC1-205ENST00000559886 FBXO41Q8TF61 875 aa15.84■□□□□ 0.13
HERC1-205ENST00000559886 LGR6Q9HBX8 967 aa15.84■□□□□ 0.13
HERC1-205ENST00000559886 CHL1O00533 1208 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 MPRIPQ6WCQ1 1025 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 USP21Q9UK80 565 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 PCDH11XQ9BZA7 1347 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 PCDH11YQ9BZA8 1340 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 RNMTO43148 476 aaKnown RBP15.83■□□□□ 0.12
HERC1-205ENST00000559886 MBIPQ9NS73 344 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 RCAN3Q9UKA8 241 aa15.83■□□□□ 0.12
HERC1-205ENST00000559886 SIPA1L3O60292 1781 aaPredicted RBP15.82■□□□□ 0.12
HERC1-205ENST00000559886 CDCA7Q9BWT1 371 aaPredicted RBP15.82■□□□□ 0.12
HERC1-205ENST00000559886 SUPT16HQ9Y5B9 1047 aaKnown RBP15.82■□□□□ 0.12
HERC1-205ENST00000559886 BARGINQ6ZT62 677 aa15.81■□□□□ 0.12
HERC1-205ENST00000559886 CCDC9Q9Y3X0 531 aaKnown RBP15.81■□□□□ 0.12
HERC1-205ENST00000559886 KDM6AO15550 1401 aaPredicted RBP15.81■□□□□ 0.12
HERC1-205ENST00000559886 HSP90AB1P08238 724 aaKnown RBP15.8■□□□□ 0.12
HERC1-205ENST00000559886 TAF7Q15545 349 aaPredicted RBP15.8■□□□□ 0.12
HERC1-205ENST00000559886 BABAM1Q9NWV8 329 aa15.8■□□□□ 0.12
HERC1-205ENST00000559886 AFF2P51816 1311 aa15.8■□□□□ 0.12
HERC1-205ENST00000559886 EXOSC9Q06265 439 aaKnown RBP15.8■□□□□ 0.12
HERC1-205ENST00000559886 DCAF5Q96JK2 942 aa15.8■□□□□ 0.12
HERC1-205ENST00000559886 CT47B1P0C2W7 299 aaPredicted RBP15.79■□□□□ 0.12
HERC1-205ENST00000559886 NKX1-1Q15270 411 aaPredicted RBP15.79■□□□□ 0.12
HERC1-205ENST00000559886 TEFQ10587 303 aa15.78■□□□□ 0.12
HERC1-205ENST00000559886 KDM3BQ7LBC6 1761 aa15.78■□□□□ 0.12
HERC1-205ENST00000559886 TNS2Q63HR2 1409 aa15.78■□□□□ 0.12
HERC1-205ENST00000559886 DDX54Q8TDD1 881 aaKnown RBP15.78■□□□□ 0.12
HERC1-205ENST00000559886 TSPYL4Q9UJ04 414 aa15.78■□□□□ 0.12
HERC1-205ENST00000559886 RNF123Q5XPI4 1314 aa15.78■□□□□ 0.12
HERC1-205ENST00000559886 MRC1P22897 1456 aa15.78■□□□□ 0.12
HERC1-205ENST00000559886 EXOC5O00471 708 aa15.77■□□□□ 0.12
HERC1-205ENST00000559886 MIS18AQ9NYP9 233 aa15.77■□□□□ 0.12
HERC1-205ENST00000559886 ATRNO75882 1429 aa15.76■□□□□ 0.11
HERC1-205ENST00000559886 GLI3P10071 1580 aa15.76■□□□□ 0.11
HERC1-205ENST00000559886 SLC52A2Q9HAB3 445 aa15.75■□□□□ 0.11
HERC1-205ENST00000559886 DDB1Q16531 1140 aa15.75■□□□□ 0.11
HERC1-205ENST00000559886 C8orf58Q8NAV2 365 aa15.75■□□□□ 0.11
HERC1-205ENST00000559886 TRPC5Q9UL62 973 aaPredicted RBP15.75■□□□□ 0.11
HERC1-205ENST00000559886 TOGARAM1Q9Y4F4 1720 aa15.74■□□□□ 0.11
HERC1-205ENST00000559886 FAM98CQ17RN3 349 aaKnown RBP15.74■□□□□ 0.11
HERC1-205ENST00000559886 GJD4Q96KN9 370 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms