RNA–Protein interactions for RNA: ENST00000559373.1

TSPAN3-206, Transcript of tetraspanin 3, humanhuman

TSL 3

Gene TSPAN3, Length 393 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-206ENST00000559373 HSP90AB2PQ58FF8 381 aa28.54■■■□□ 2.16
TSPAN3-206ENST00000559373 RTL1A6NKG5 1358 aa28.53■■■□□ 2.16
TSPAN3-206ENST00000559373 KCNQ4P56696 695 aa28.53■■■□□ 2.16
TSPAN3-206ENST00000559373 LRRC4BQ9NT99 713 aa28.53■■■□□ 2.16
TSPAN3-206ENST00000559373 LY75O60449 1722 aa28.52■■■□□ 2.16
TSPAN3-206ENST00000559373 PRIM1P49642 420 aaKnown RBP28.52■■■□□ 2.16
TSPAN3-206ENST00000559373 ZCRB1Q8TBF4 217 aaKnown RBP28.52■■■□□ 2.16
TSPAN3-206ENST00000559373 ZNF827Q17R98 1081 aa28.5■■■□□ 2.15
TSPAN3-206ENST00000559373 TIMELESSQ9UNS1 1208 aa28.49■■■□□ 2.15
TSPAN3-206ENST00000559373 EMILIN1Q9Y6C2 1016 aa28.49■■■□□ 2.15
TSPAN3-206ENST00000559373 ITGB4P16144 1822 aa28.48■■■□□ 2.15
TSPAN3-206ENST00000559373 PPM1GO15355 546 aaPredicted RBP28.48■■■□□ 2.15
TSPAN3-206ENST00000559373 PTGER2P43116 358 aa28.48■■■□□ 2.15
TSPAN3-206ENST00000559373 SMG6Q86US8 1419 aaKnown RBP28.47■■■□□ 2.15
TSPAN3-206ENST00000559373 CLSPNQ9HAW4 1339 aa28.45■■■□□ 2.15
TSPAN3-206ENST00000559373 RAPGEF4Q8WZA2 1011 aa28.45■■■□□ 2.14
TSPAN3-206ENST00000559373 ANKRD26Q9UPS8 1709 aa28.45■■■□□ 2.14
TSPAN3-206ENST00000559373 INSRP06213 1382 aa28.45■■■□□ 2.14
TSPAN3-206ENST00000559373 FLT4P35916 1363 aa28.45■■■□□ 2.14
TSPAN3-206ENST00000559373 QSER1Q2KHR3 1735 aa28.44■■■□□ 2.14
TSPAN3-206ENST00000559373 NSD2O96028 1365 aa28.44■■■□□ 2.14
TSPAN3-206ENST00000559373 CCER1Q8TC90 406 aaPredicted RBP28.43■■■□□ 2.14
TSPAN3-206ENST00000559373 TOGARAM1Q9Y4F4 1720 aa28.41■■■□□ 2.14
TSPAN3-206ENST00000559373 TATP17735 454 aaPredicted RBP28.41■■■□□ 2.14
TSPAN3-206ENST00000559373 HSPA5P11021 654 aaKnown RBP28.4■■■□□ 2.14
TSPAN3-206ENST00000559373 MTFR1LQ9H019 292 aa28.4■■■□□ 2.14
TSPAN3-206ENST00000559373 TNNT2P45379 298 aaPredicted RBP28.39■■■□□ 2.14
TSPAN3-206ENST00000559373 TAF1LQ8IZX4 1826 aa28.39■■■□□ 2.13
TSPAN3-206ENST00000559373 PKD1L3Q7Z443 1732 aa28.38■■■□□ 2.13
TSPAN3-206ENST00000559373 AKT1S1Q96B36 256 aa28.38■■■□□ 2.13
TSPAN3-206ENST00000559373 FHDC1Q9C0D6 1143 aaPredicted RBP28.37■■■□□ 2.13
TSPAN3-206ENST00000559373 SLC27A3Q5K4L6 730 aa28.36■■■□□ 2.13
TSPAN3-206ENST00000559373 SGIP1Q9BQI5 828 aa28.36■■■□□ 2.13
TSPAN3-206ENST00000559373 CGNL1Q0VF96 1302 aa28.35■■■□□ 2.13
TSPAN3-206ENST00000559373 C5P01031 1676 aa28.35■■■□□ 2.13
TSPAN3-206ENST00000559373 KIF24Q5T7B8 1368 aa28.35■■■□□ 2.13
TSPAN3-206ENST00000559373 DCAF8L1A6NGE4 600 aa28.34■■■□□ 2.13
TSPAN3-206ENST00000559373 YY1P25490 414 aa28.34■■■□□ 2.13
TSPAN3-206ENST00000559373 EIF4G2P78344 907 aaKnown RBP eCLIP28.34■■■□□ 2.13
TSPAN3-206ENST00000559373 SYT17Q9BSW7 474 aa28.33■■■□□ 2.13
TSPAN3-206ENST00000559373 TFCP2L1Q9NZI6 479 aa28.33■■■□□ 2.13
TSPAN3-206ENST00000559373 CCNL1Q9UK58 526 aaPredicted RBP28.33■■■□□ 2.13
TSPAN3-206ENST00000559373 CYP27B1O15528 508 aa28.32■■■□□ 2.12
TSPAN3-206ENST00000559373 PNPLA7Q6ZV29 1317 aa28.32■■■□□ 2.12
TSPAN3-206ENST00000559373 PCDH11XQ9BZA7 1347 aa28.32■■■□□ 2.12
TSPAN3-206ENST00000559373 PCDH11YQ9BZA8 1340 aa28.32■■■□□ 2.12
TSPAN3-206ENST00000559373 MPRIPQ6WCQ1 1025 aa28.31■■■□□ 2.12
TSPAN3-206ENST00000559373 POLKQ9UBT6 870 aa28.31■■■□□ 2.12
TSPAN3-206ENST00000559373 COL24A1Q17RW2 1714 aa28.31■■■□□ 2.12
TSPAN3-206ENST00000559373 CHD4Q14839 1912 aa28.31■■■□□ 2.12
TSPAN3-206ENST00000559373 ARXQ96QS3 562 aa28.3■■■□□ 2.12
TSPAN3-206ENST00000559373 EYA1Q99502 592 aa28.29■■■□□ 2.12
TSPAN3-206ENST00000559373 PANK3Q9H999 370 aa28.29■■■□□ 2.12
TSPAN3-206ENST00000559373 UTRNP46939 3433 aa28.28■■■□□ 2.12
TSPAN3-206ENST00000559373 WASHC2AQ641Q2 1341 aa28.28■■■□□ 2.12
TSPAN3-206ENST00000559373 KLHL34Q8N239 644 aa28.28■■■□□ 2.12
TSPAN3-206ENST00000559373 MSH5O43196 834 aa28.26■■■□□ 2.11
TSPAN3-206ENST00000559373 NCAPD2Q15021 1401 aa28.24■■■□□ 2.11
TSPAN3-206ENST00000559373 EIF4A2Q14240 407 aaKnown RBP28.22■■■□□ 2.11
TSPAN3-206ENST00000559373 PALLDQ8WX93 1383 aa28.22■■■□□ 2.11
TSPAN3-206ENST00000559373 COL23A1Q86Y22 540 aaPredicted RBP28.21■■■□□ 2.11
TSPAN3-206ENST00000559373 SLC16A10Q8TF71 515 aa28.2■■■□□ 2.1
TSPAN3-206ENST00000559373 SPG7Q9UQ90 795 aa28.2■■■□□ 2.1
TSPAN3-206ENST00000559373 UBR3Q6ZT12 1888 aa28.2■■■□□ 2.1
TSPAN3-206ENST00000559373 C4BP0C0L5 1744 aa28.2■■■□□ 2.1
TSPAN3-206ENST00000559373 POLD1P28340 1107 aa28.18■■■□□ 2.1
TSPAN3-206ENST00000559373 MSL1Q68DK7 614 aa28.18■■■□□ 2.1
TSPAN3-206ENST00000559373 SMIM5Q71RC9 77 aa28.18■■■□□ 2.1
TSPAN3-206ENST00000559373 PIGBQ92521 554 aa28.18■■■□□ 2.1
TSPAN3-206ENST00000559373 GOLGB1Q14789 3259 aaKnown RBP28.17■■■□□ 2.1
TSPAN3-206ENST00000559373 NKX1-1Q15270 411 aaPredicted RBP28.14■■■□□ 2.1
TSPAN3-206ENST00000559373 MORC1Q86VD1 984 aa28.13■■■□□ 2.09
TSPAN3-206ENST00000559373 AMIGO3Q86WK7 504 aa28.13■■■□□ 2.09
TSPAN3-206ENST00000559373 PHKG2P15735 406 aa28.12■■■□□ 2.09
TSPAN3-206ENST00000559373 PELP1Q8IZL8 1130 aaKnown RBP28.12■■■□□ 2.09
TSPAN3-206ENST00000559373 NLGN2Q8NFZ4 835 aa28.12■■■□□ 2.09
TSPAN3-206ENST00000559373 VIRMAQ69YN4 1812 aaKnown RBP28.12■■■□□ 2.09
TSPAN3-206ENST00000559373 IFNL2Q8IZJ0 200 aa28.11■■■□□ 2.09
TSPAN3-206ENST00000559373 ASAP1Q9ULH1 1129 aa28.11■■■□□ 2.09
TSPAN3-206ENST00000559373 SMARCC1Q92922 1105 aaPredicted RBP28.1■■■□□ 2.09
TSPAN3-206ENST00000559373 TMOD3Q9NYL9 352 aa28.1■■■□□ 2.09
TSPAN3-206ENST00000559373 MAP3K5Q99683 1374 aa28.1■■■□□ 2.09
TSPAN3-206ENST00000559373 PHF14O94880 888 aa28.09■■■□□ 2.09
TSPAN3-206ENST00000559373 GPR162Q16538 588 aa28.09■■■□□ 2.09
TSPAN3-206ENST00000559373 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.09■■■□□ 2.09
TSPAN3-206ENST00000559373 IGSF1Q8N6C5 1336 aa28.09■■■□□ 2.09
TSPAN3-206ENST00000559373 AEBP1Q8IUX7 1158 aa28.07■■■□□ 2.08
TSPAN3-206ENST00000559373 AK7Q96M32 723 aa28.07■■■□□ 2.08
TSPAN3-206ENST00000559373 KNSTRNQ9Y448 316 aa28.07■■■□□ 2.08
TSPAN3-206ENST00000559373 LINC00116Q8NCU8 138 aa28.06■■■□□ 2.08
TSPAN3-206ENST00000559373 LOC102724428A0A0B4J2F2 783 aa28.05■■■□□ 2.08
TSPAN3-206ENST00000559373 SIK1P57059 783 aa28.05■■■□□ 2.08
TSPAN3-206ENST00000559373 KIF7Q2M1P5 1343 aa28.05■■■□□ 2.08
TSPAN3-206ENST00000559373 ITPK1Q13572 414 aa28.04■■■□□ 2.08
TSPAN3-206ENST00000559373 ATG3Q9NT62 314 aa28.03■■■□□ 2.08
TSPAN3-206ENST00000559373 ATP6V1AP38606 617 aa28.01■■■□□ 2.07
TSPAN3-206ENST00000559373 CNGB1Q14028 1251 aaPredicted RBP28.01■■■□□ 2.07
TSPAN3-206ENST00000559373 ZNF530Q6P9A1 599 aaPredicted RBP28.01■■■□□ 2.07
TSPAN3-206ENST00000559373 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28■■■□□ 2.07
TSPAN3-206ENST00000559373 PLEKHO1Q53GL0 409 aaPredicted RBP28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms