RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 KIF7Q2M1P5 1343 aa17.21■□□□□ 0.34
SMAD3-208ENST00000558827 FAM208AQ9UK61 1670 aaKnown RBP17.2■□□□□ 0.34
SMAD3-208ENST00000558827 TATP17735 454 aaPredicted RBP17.2■□□□□ 0.34
SMAD3-208ENST00000558827 BCL9O00512 1426 aa17.2■□□□□ 0.34
SMAD3-208ENST00000558827 PRIM1P49642 420 aaKnown RBP17.19■□□□□ 0.34
SMAD3-208ENST00000558827 PDGFDQ9GZP0 370 aaPredicted RBP17.19■□□□□ 0.34
SMAD3-208ENST00000558827 KCNQ4P56696 695 aa17.18■□□□□ 0.34
SMAD3-208ENST00000558827 MORC1Q86VD1 984 aa17.18■□□□□ 0.34
SMAD3-208ENST00000558827 EYA1Q99502 592 aa17.17■□□□□ 0.34
SMAD3-208ENST00000558827 KNSTRNQ9Y448 316 aa17.17■□□□□ 0.34
SMAD3-208ENST00000558827 NHSQ6T4R5 1651 aa17.16■□□□□ 0.34
SMAD3-208ENST00000558827 WASHC2AQ641Q2 1341 aa17.16■□□□□ 0.34
SMAD3-208ENST00000558827 BTAF1O14981 1849 aa17.15■□□□□ 0.34
SMAD3-208ENST00000558827 EIF4A2Q14240 407 aaKnown RBP17.15■□□□□ 0.34
SMAD3-208ENST00000558827 STK32BQ9NY57 414 aa17.14■□□□□ 0.33
SMAD3-208ENST00000558827 SHANK3Q9BYB0 1731 aa17.13■□□□□ 0.33
SMAD3-208ENST00000558827 LRRC4BQ9NT99 713 aa17.13■□□□□ 0.33
SMAD3-208ENST00000558827 KIF24Q5T7B8 1368 aa17.13■□□□□ 0.33
SMAD3-208ENST00000558827 CYP27B1O15528 508 aa17.12■□□□□ 0.33
SMAD3-208ENST00000558827 ZBTB7AO95365 584 aa17.12■□□□□ 0.33
SMAD3-208ENST00000558827 CC2D1BQ5T0F9 858 aaKnown RBP17.12■□□□□ 0.33
SMAD3-208ENST00000558827 ANKRD26Q9UPS8 1709 aa17.12■□□□□ 0.33
SMAD3-208ENST00000558827 DOT1LQ8TEK3 1739 aa17.11■□□□□ 0.33
SMAD3-208ENST00000558827 SLC15A2Q16348 729 aa17.11■□□□□ 0.33
SMAD3-208ENST00000558827 ATF5Q9Y2D1 282 aaPredicted RBP17.11■□□□□ 0.33
SMAD3-208ENST00000558827 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
SMAD3-208ENST00000558827 LRP5O75197 1615 aa17.1■□□□□ 0.33
SMAD3-208ENST00000558827 RGPD3A6NKT7 1758 aaPredicted RBP17.1■□□□□ 0.33
SMAD3-208ENST00000558827 RGPD4Q7Z3J3 1758 aa17.1■□□□□ 0.33
SMAD3-208ENST00000558827 ZNF827Q17R98 1081 aa17.09■□□□□ 0.33
SMAD3-208ENST00000558827 MPRIPQ6WCQ1 1025 aa17.09■□□□□ 0.33
SMAD3-208ENST00000558827 NSD2O96028 1365 aa17.08■□□□□ 0.32
SMAD3-208ENST00000558827 PCDH11XQ9BZA7 1347 aa17.08■□□□□ 0.32
SMAD3-208ENST00000558827 PCDH11YQ9BZA8 1340 aa17.08■□□□□ 0.32
SMAD3-208ENST00000558827 SPON1Q9HCB6 807 aa17.08■□□□□ 0.32
SMAD3-208ENST00000558827 PPP1R1BQ9UD71 204 aaPredicted RBP17.08■□□□□ 0.32
SMAD3-208ENST00000558827 AEBP1Q8IUX7 1158 aa17.07■□□□□ 0.32
SMAD3-208ENST00000558827 SPG7Q9UQ90 795 aa17.07■□□□□ 0.32
SMAD3-208ENST00000558827 PER1O15534 1290 aaPredicted RBP17.05■□□□□ 0.32
SMAD3-208ENST00000558827 CCNL1Q9UK58 526 aaPredicted RBP17.05■□□□□ 0.32
SMAD3-208ENST00000558827 MTHFSP49914 203 aa17.04■□□□□ 0.32
SMAD3-208ENST00000558827 SULT6B1Q6IMI4 303 aa17.03■□□□□ 0.32
SMAD3-208ENST00000558827 PIGBQ92521 554 aa17.03■□□□□ 0.32
SMAD3-208ENST00000558827 NCAPD2Q15021 1401 aa17.03■□□□□ 0.32
SMAD3-208ENST00000558827 IGSF1Q8N6C5 1336 aa17.02■□□□□ 0.32
SMAD3-208ENST00000558827 PHKG2P15735 406 aa17.02■□□□□ 0.32
SMAD3-208ENST00000558827 SLC27A3Q5K4L6 730 aa17.02■□□□□ 0.32
SMAD3-208ENST00000558827 AKT1S1Q96B36 256 aa17.02■□□□□ 0.32
SMAD3-208ENST00000558827 IL13P35225 146 aa17.01■□□□□ 0.31
SMAD3-208ENST00000558827 IFNL2Q8IZJ0 200 aa17.01■□□□□ 0.31
SMAD3-208ENST00000558827 TFCP2L1Q9NZI6 479 aa17.01■□□□□ 0.31
SMAD3-208ENST00000558827 CASZ1Q86V15 1759 aa17.01■□□□□ 0.31
SMAD3-208ENST00000558827 MSH5O43196 834 aa17■□□□□ 0.31
SMAD3-208ENST00000558827 ZNF530Q6P9A1 599 aaPredicted RBP17■□□□□ 0.31
SMAD3-208ENST00000558827 PKD1L3Q7Z443 1732 aa17■□□□□ 0.31
SMAD3-208ENST00000558827 TOGARAM1Q9Y4F4 1720 aa17■□□□□ 0.31
SMAD3-208ENST00000558827 ITGB4P16144 1822 aa16.99■□□□□ 0.31
SMAD3-208ENST00000558827 HMOX1P09601 288 aa16.99■□□□□ 0.31
SMAD3-208ENST00000558827 PTGER2P43116 358 aa16.99■□□□□ 0.31
SMAD3-208ENST00000558827 NKX1-1Q15270 411 aaPredicted RBP16.99■□□□□ 0.31
SMAD3-208ENST00000558827 PLEKHO1Q53GL0 409 aaPredicted RBP16.99■□□□□ 0.31
SMAD3-208ENST00000558827 SMIM5Q71RC9 77 aa16.99■□□□□ 0.31
SMAD3-208ENST00000558827 PALLDQ8WX93 1383 aa16.99■□□□□ 0.31
SMAD3-208ENST00000558827 PAPPAQ13219 1627 aa16.99■□□□□ 0.31
SMAD3-208ENST00000558827 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.98■□□□□ 0.31
SMAD3-208ENST00000558827 TMOD3Q9NYL9 352 aa16.98■□□□□ 0.31
SMAD3-208ENST00000558827 ASAP1Q9ULH1 1129 aa16.98■□□□□ 0.31
SMAD3-208ENST00000558827 PNPLA7Q6ZV29 1317 aa16.97■□□□□ 0.31
SMAD3-208ENST00000558827 LY75O60449 1722 aa16.97■□□□□ 0.31
SMAD3-208ENST00000558827 MTFR1LQ9H019 292 aa16.96■□□□□ 0.31
SMAD3-208ENST00000558827 KLHL34Q8N239 644 aa16.95■□□□□ 0.3
SMAD3-208ENST00000558827 DIAPH1O60610 1272 aaKnown RBP16.94■□□□□ 0.3
SMAD3-208ENST00000558827 MSL1Q68DK7 614 aa16.94■□□□□ 0.3
SMAD3-208ENST00000558827 COL23A1Q86Y22 540 aaPredicted RBP16.94■□□□□ 0.3
SMAD3-208ENST00000558827 SMARCC1Q92922 1105 aaPredicted RBP16.94■□□□□ 0.3
SMAD3-208ENST00000558827 ATG3Q9NT62 314 aa16.94■□□□□ 0.3
SMAD3-208ENST00000558827 TUBGCP6Q96RT7 1819 aa16.93■□□□□ 0.3
SMAD3-208ENST00000558827 U2SURPO15042 1029 aaKnown RBP16.93■□□□□ 0.3
SMAD3-208ENST00000558827 C1orf141Q5JVX7 400 aa16.93■□□□□ 0.3
SMAD3-208ENST00000558827 LOC102724428A0A0B4J2F2 783 aa16.92■□□□□ 0.3
SMAD3-208ENST00000558827 PHF14O94880 888 aa16.92■□□□□ 0.3
SMAD3-208ENST00000558827 SIK1P57059 783 aa16.92■□□□□ 0.3
SMAD3-208ENST00000558827 CABP4P57796 275 aa16.92■□□□□ 0.3
SMAD3-208ENST00000558827 AMOTQ4VCS5 1084 aa16.92■□□□□ 0.3
SMAD3-208ENST00000558827 AMIGO3Q86WK7 504 aa16.92■□□□□ 0.3
SMAD3-208ENST00000558827 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
SMAD3-208ENST00000558827 FHDC1Q9C0D6 1143 aaPredicted RBP16.92■□□□□ 0.3
SMAD3-208ENST00000558827 ITPK1Q13572 414 aa16.91■□□□□ 0.3
SMAD3-208ENST00000558827 LINC00116Q8NCU8 138 aa16.91■□□□□ 0.3
SMAD3-208ENST00000558827 ARXQ96QS3 562 aa16.91■□□□□ 0.3
SMAD3-208ENST00000558827 SGIP1Q9BQI5 828 aa16.91■□□□□ 0.3
SMAD3-208ENST00000558827 KDM6AO15550 1401 aaPredicted RBP16.9■□□□□ 0.3
SMAD3-208ENST00000558827 ATP6V1AP38606 617 aa16.9■□□□□ 0.3
SMAD3-208ENST00000558827 DCAF5Q96JK2 942 aa16.9■□□□□ 0.3
SMAD3-208ENST00000558827 AK7Q96M32 723 aa16.9■□□□□ 0.3
SMAD3-208ENST00000558827 HSP90AB1P08238 724 aaKnown RBP16.89■□□□□ 0.29
SMAD3-208ENST00000558827 NFATC2IPQ8NCF5 419 aa16.89■□□□□ 0.29
SMAD3-208ENST00000558827 LGR6Q9HBX8 967 aa16.89■□□□□ 0.29
SMAD3-208ENST00000558827 C5P01031 1676 aa16.88■□□□□ 0.29
SMAD3-208ENST00000558827 ERVV-2B6SEH9 535 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms