RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 DLG5Q8TDM6 1919 aa9.21□□□□□ -0.93
VPS13C-206ENST00000558338 ARHGAP45Q92619 1136 aa9.21□□□□□ -0.94
VPS13C-206ENST00000558338 NOB1Q9ULX3 412 aaKnown RBP9.21□□□□□ -0.94
VPS13C-206ENST00000558338 TNNQ9UQP3 1299 aa9.21□□□□□ -0.94
VPS13C-206ENST00000558338 EMILIN1Q9Y6C2 1016 aa9.21□□□□□ -0.94
VPS13C-206ENST00000558338 PLEKHG3A1L390 1219 aa9.2□□□□□ -0.94
VPS13C-206ENST00000558338 DEKP35659 375 aaKnown RBP9.2□□□□□ -0.94
VPS13C-206ENST00000558338 BECN1Q14457 450 aa9.2□□□□□ -0.94
VPS13C-206ENST00000558338 PIK3R4Q99570 1358 aa9.2□□□□□ -0.94
VPS13C-206ENST00000558338 USP6P35125 1406 aa9.2□□□□□ -0.94
VPS13C-206ENST00000558338 RGL2O15211 777 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 CCDC9Q9Y3X0 531 aaKnown RBP9.19□□□□□ -0.94
VPS13C-206ENST00000558338 TTC21BQ7Z4L5 1316 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 TTC21AQ8NDW8 1320 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 PRR36Q9H6K5 1346 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 RGPD1P0DJD0 1748 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 FMN2Q9NZ56 1722 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 USP31Q70CQ4 1352 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 HMOX1P09601 288 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 CREBZFQ9NS37 354 aa9.19□□□□□ -0.94
VPS13C-206ENST00000558338 XRN1Q8IZH2 1706 aaKnown RBP9.18□□□□□ -0.94
VPS13C-206ENST00000558338 KIF24Q5T7B8 1368 aa9.18□□□□□ -0.94
VPS13C-206ENST00000558338 ZNF853P0CG23 659 aa9.18□□□□□ -0.94
VPS13C-206ENST00000558338 SMC5Q8IY18 1101 aa9.18□□□□□ -0.94
VPS13C-206ENST00000558338 PROM2Q8N271 834 aa9.18□□□□□ -0.94
VPS13C-206ENST00000558338 TMEM57Q8N5G2 664 aa9.18□□□□□ -0.94
VPS13C-206ENST00000558338 ZBTB40Q9NUA8 1239 aa9.18□□□□□ -0.94
VPS13C-206ENST00000558338 LAS1LQ9Y4W2 734 aaKnown RBP9.18□□□□□ -0.94
VPS13C-206ENST00000558338 ANKARQ7Z5J8 1434 aa9.17□□□□□ -0.94
VPS13C-206ENST00000558338 ACEP12821 1306 aa9.17□□□□□ -0.94
VPS13C-206ENST00000558338 TBX22Q9Y458 520 aa9.17□□□□□ -0.94
VPS13C-206ENST00000558338 ARHGEF10O15013 1369 aa9.17□□□□□ -0.94
VPS13C-206ENST00000558338 USP54Q70EL1 1684 aa9.17□□□□□ -0.94
VPS13C-206ENST00000558338 PHACTR3Q96KR7 559 aa9.17□□□□□ -0.94
VPS13C-206ENST00000558338 API5Q9BZZ5 524 aaKnown RBP9.17□□□□□ -0.94
VPS13C-206ENST00000558338 SSH2Q76I76 1423 aa9.16□□□□□ -0.94
VPS13C-206ENST00000558338 PTPRUQ92729 1446 aa9.16□□□□□ -0.94
VPS13C-206ENST00000558338 USP19O94966 1318 aa9.16□□□□□ -0.94
VPS13C-206ENST00000558338 VAMP4O75379 141 aa9.16□□□□□ -0.94
VPS13C-206ENST00000558338 RRS1Q15050 365 aaKnown RBP9.16□□□□□ -0.94
VPS13C-206ENST00000558338 MRPL50Q8N5N7 158 aaKnown RBP9.16□□□□□ -0.94
VPS13C-206ENST00000558338 PHF12Q96QT6 1004 aa9.16□□□□□ -0.94
VPS13C-206ENST00000558338 PEAK1Q9H792 1746 aa9.16□□□□□ -0.94
VPS13C-206ENST00000558338 LTKP29376 864 aa9.15□□□□□ -0.94
VPS13C-206ENST00000558338 TWISTNBQ3B726 338 aaPredicted RBP9.15□□□□□ -0.94
VPS13C-206ENST00000558338 THEMISQ8N1K5 641 aaPredicted RBP9.15□□□□□ -0.94
VPS13C-206ENST00000558338 GCC1Q96CN9 775 aa9.15□□□□□ -0.94
VPS13C-206ENST00000558338 MBIPQ9NS73 344 aa9.15□□□□□ -0.94
VPS13C-206ENST00000558338 ABCC4O15439 1325 aa9.15□□□□□ -0.95
VPS13C-206ENST00000558338 FBLN1P23142 703 aa9.15□□□□□ -0.95
VPS13C-206ENST00000558338 EIF4A2Q14240 407 aaKnown RBP9.15□□□□□ -0.95
VPS13C-206ENST00000558338 TBC1D32Q96NH3 1257 aa9.15□□□□□ -0.95
VPS13C-206ENST00000558338 SBNO1A3KN83 1393 aa9.14□□□□□ -0.95
VPS13C-206ENST00000558338 KIAA0232Q92628 1395 aa9.14□□□□□ -0.95
VPS13C-206ENST00000558338 NCKAP5LQ9HCH0 1330 aa9.14□□□□□ -0.95
VPS13C-206ENST00000558338 FLT4P35916 1363 aa9.14□□□□□ -0.95
VPS13C-206ENST00000558338 NUCB1Q02818 461 aa9.13□□□□□ -0.95
VPS13C-206ENST00000558338 AMOTL2Q9Y2J4 779 aa9.13□□□□□ -0.95
VPS13C-206ENST00000558338 CEP170BQ9Y4F5 1589 aaPredicted RBP9.13□□□□□ -0.95
VPS13C-206ENST00000558338 SULT6B1Q6IMI4 303 aa9.13□□□□□ -0.95
VPS13C-206ENST00000558338 PIK3C2AO00443 1686 aa9.13□□□□□ -0.95
VPS13C-206ENST00000558338 ZBTB7BO15156 539 aaPredicted RBP9.12□□□□□ -0.95
VPS13C-206ENST00000558338 NFKBIBQ15653 356 aa9.12□□□□□ -0.95
VPS13C-206ENST00000558338 THUMPD2Q9BTF0 503 aaKnown RBP9.12□□□□□ -0.95
VPS13C-206ENST00000558338 LCE2DQ5TA82 110 aaPredicted RBP9.11□□□□□ -0.95
VPS13C-206ENST00000558338 CHD1LQ86WJ1 897 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 SLC26A8Q96RN1 970 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 ZNF142P52746 1687 aaPredicted RBP9.11□□□□□ -0.95
VPS13C-206ENST00000558338 PTPRCP08575 1304 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 LRRC37A3O60309 1634 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 SPDYE4A6NLX3 237 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 SEC24BO95487 1268 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 POTEJP0CG39 1038 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 SLC4A3P48751 1232 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 TSPYL6Q8N831 410 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 NGDNQ8NEJ9 315 aaKnown RBP9.11□□□□□ -0.95
VPS13C-206ENST00000558338 ARID3AQ99856 593 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 METRNQ9UJH8 293 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 KDRP35968 1356 aa9.11□□□□□ -0.95
VPS13C-206ENST00000558338 RGPD8O14715 1765 aaPredicted RBP9.1□□□□□ -0.95
VPS13C-206ENST00000558338 CHL1O00533 1208 aa9.1□□□□□ -0.95
VPS13C-206ENST00000558338 BMP2KLQ5H9B9 411 aa9.1□□□□□ -0.95
VPS13C-206ENST00000558338 C8orf58Q8NAV2 365 aa9.1□□□□□ -0.95
VPS13C-206ENST00000558338 GAS2L2Q8NHY3 880 aa9.1□□□□□ -0.95
VPS13C-206ENST00000558338 RTL1A6NKG5 1358 aa9.09□□□□□ -0.95
VPS13C-206ENST00000558338 HTATSF1O43719 755 aaKnown RBP9.09□□□□□ -0.95
VPS13C-206ENST00000558338 CEBPAP49715 358 aaPredicted RBP9.09□□□□□ -0.95
VPS13C-206ENST00000558338 AEBP1Q8IUX7 1158 aa9.09□□□□□ -0.95
VPS13C-206ENST00000558338 RTF1Q92541 710 aaKnown RBP9.09□□□□□ -0.95
VPS13C-206ENST00000558338 C22orf23Q9BZE7 217 aa9.09□□□□□ -0.95
VPS13C-206ENST00000558338 CRB1P82279 1406 aa9.09□□□□□ -0.95
VPS13C-206ENST00000558338 SOS1Q07889 1333 aaPredicted RBP9.09□□□□□ -0.95
VPS13C-206ENST00000558338 MAP3K19Q56UN5 1328 aa9.09□□□□□ -0.95
VPS13C-206ENST00000558338 IGSF1Q8N6C5 1336 aa9.09□□□□□ -0.95
VPS13C-206ENST00000558338 FAM83GA6ND36 823 aa9.08□□□□□ -0.96
VPS13C-206ENST00000558338 INTS3Q68E01 1043 aaKnown RBP9.08□□□□□ -0.96
VPS13C-206ENST00000558338 MAMSTRQ6ZN01 415 aa9.08□□□□□ -0.96
VPS13C-206ENST00000558338 AMPHP49418 695 aa9.08□□□□□ -0.96
VPS13C-206ENST00000558338 HSP90AB2PQ58FF8 381 aa9.08□□□□□ -0.96
VPS13C-206ENST00000558338 LNPKQ9C0E8 428 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 162.8 ms