RNA–Protein interactions for RNA: ENST00000558138.1

SPG11-207, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 750 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-207ENST00000558138 PCDH11YQ9BZA8 1340 aa12.1□□□□□ -0.47
SPG11-207ENST00000558138 EN1Q05925 392 aaPredicted RBP12.09□□□□□ -0.47
SPG11-207ENST00000558138 SPG7Q9UQ90 795 aa12.09□□□□□ -0.47
SPG11-207ENST00000558138 EP400Q96L91 3159 aa12.08□□□□□ -0.48
SPG11-207ENST00000558138 U2SURPO15042 1029 aaKnown RBP12.08□□□□□ -0.48
SPG11-207ENST00000558138 DIAPH1O60610 1272 aaKnown RBP12.08□□□□□ -0.48
SPG11-207ENST00000558138 SULT6B1Q6IMI4 303 aa12.07□□□□□ -0.48
SPG11-207ENST00000558138 TNS1Q9HBL0 1735 aaKnown RBP12.07□□□□□ -0.48
SPG11-207ENST00000558138 IGSF1Q8N6C5 1336 aa12.07□□□□□ -0.48
SPG11-207ENST00000558138 ZNF316A6NFI3 1004 aaPredicted RBP12.06□□□□□ -0.48
SPG11-207ENST00000558138 IL13P35225 146 aa12.06□□□□□ -0.48
SPG11-207ENST00000558138 EZH2Q15910 746 aaKnown RBP12.06□□□□□ -0.48
SPG11-207ENST00000558138 BCL11BQ9C0K0 894 aaPredicted RBP12.06□□□□□ -0.48
SPG11-207ENST00000558138 HMOX1P09601 288 aa12.05□□□□□ -0.48
SPG11-207ENST00000558138 PPP2R1AP30153 589 aa12.05□□□□□ -0.48
SPG11-207ENST00000558138 PLEKHO1Q53GL0 409 aaPredicted RBP12.05□□□□□ -0.48
SPG11-207ENST00000558138 NUDCQ9Y266 331 aa12.05□□□□□ -0.48
SPG11-207ENST00000558138 SBF2Q86WG5 1849 aa12.04□□□□□ -0.48
SPG11-207ENST00000558138 KCNQ2O43526 872 aa12.04□□□□□ -0.48
SPG11-207ENST00000558138 C1orf141Q5JVX7 400 aa12.04□□□□□ -0.48
SPG11-207ENST00000558138 AEBP1Q8IUX7 1158 aa12.04□□□□□ -0.48
SPG11-207ENST00000558138 NHSQ6T4R5 1651 aa12.03□□□□□ -0.48
SPG11-207ENST00000558138 DOT1LQ8TEK3 1739 aa12.03□□□□□ -0.48
SPG11-207ENST00000558138 ZNF530Q6P9A1 599 aaPredicted RBP12.03□□□□□ -0.48
SPG11-207ENST00000558138 SHANK3Q9BYB0 1731 aa12.03□□□□□ -0.48
SPG11-207ENST00000558138 BCL9O00512 1426 aa12.03□□□□□ -0.48
SPG11-207ENST00000558138 PRIM1P49642 420 aaKnown RBP12.02□□□□□ -0.49
SPG11-207ENST00000558138 RALBP1Q15311 655 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 AMOTQ4VCS5 1084 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 NBPF14Q5TI25 921 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 PTF1AQ7RTS3 328 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 IFNL2Q8IZJ0 200 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 PKD1L3Q7Z443 1732 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 PARD3Q8TEW0 1356 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 NCAPD2Q15021 1401 aa12.02□□□□□ -0.49
SPG11-207ENST00000558138 NEFMP07197 916 aa12.01□□□□□ -0.49
SPG11-207ENST00000558138 U2AF1L5P0DN76 240 aaPredicted RBP12.01□□□□□ -0.49
SPG11-207ENST00000558138 U2AF1Q01081 240 aaKnown RBP eCLIP12.01□□□□□ -0.49
SPG11-207ENST00000558138 MPRIPQ6WCQ1 1025 aa12.01□□□□□ -0.49
SPG11-207ENST00000558138 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.01□□□□□ -0.49
SPG11-207ENST00000558138 CYP27B1O15528 508 aa12□□□□□ -0.49
SPG11-207ENST00000558138 HSP90AB1P08238 724 aaKnown RBP12□□□□□ -0.49
SPG11-207ENST00000558138 CAMKK2Q96RR4 588 aa12□□□□□ -0.49
SPG11-207ENST00000558138 BTAF1O14981 1849 aa12□□□□□ -0.49
SPG11-207ENST00000558138 PSDA5PKW4 1024 aaPredicted RBP11.99□□□□□ -0.49
SPG11-207ENST00000558138 PLSCR1O15162 318 aa11.99□□□□□ -0.49
SPG11-207ENST00000558138 PHKG2P15735 406 aa11.99□□□□□ -0.49
SPG11-207ENST00000558138 TMOD3Q9NYL9 352 aa11.99□□□□□ -0.49
SPG11-207ENST00000558138 COL3A1P02461 1466 aaPredicted RBP11.99□□□□□ -0.49
SPG11-207ENST00000558138 MYBBP1AQ9BQG0 1328 aaKnown RBP11.98□□□□□ -0.49
SPG11-207ENST00000558138 KDRP35968 1356 aa11.97□□□□□ -0.49
SPG11-207ENST00000558138 PLEKHG2Q9H7P9 1386 aa11.97□□□□□ -0.49
SPG11-207ENST00000558138 R3HDM1Q15032 1099 aaKnown RBP11.97□□□□□ -0.49
SPG11-207ENST00000558138 TXNRD1Q16881 649 aa11.97□□□□□ -0.49
SPG11-207ENST00000558138 STK32BQ9NY57 414 aa11.97□□□□□ -0.49
SPG11-207ENST00000558138 RGPD3A6NKT7 1758 aaPredicted RBP11.97□□□□□ -0.49
SPG11-207ENST00000558138 RGPD4Q7Z3J3 1758 aa11.97□□□□□ -0.49
SPG11-207ENST00000558138 RREB1Q92766 1687 aa11.97□□□□□ -0.49
SPG11-207ENST00000558138 PRKAR2BP31323 418 aa11.96□□□□□ -0.49
SPG11-207ENST00000558138 CABP4P57796 275 aa11.96□□□□□ -0.49
SPG11-207ENST00000558138 GAS2L2Q8NHY3 880 aa11.96□□□□□ -0.49
SPG11-207ENST00000558138 DCAF5Q96JK2 942 aa11.96□□□□□ -0.49
SPG11-207ENST00000558138 NUP188Q5SRE5 1749 aa11.96□□□□□ -0.49
SPG11-207ENST00000558138 ANP32CO43423 234 aa11.95□□□□□ -0.5
SPG11-207ENST00000558138 WDR43Q15061 677 aaKnown RBP eCLIP11.95□□□□□ -0.5
SPG11-207ENST00000558138 AKAP4Q5JQC9 854 aa11.95□□□□□ -0.5
SPG11-207ENST00000558138 SMARCC1Q92922 1105 aaPredicted RBP11.95□□□□□ -0.5
SPG11-207ENST00000558138 CCNL1Q9UK58 526 aaPredicted RBP11.95□□□□□ -0.5
SPG11-207ENST00000558138 TOGARAM1Q9Y4F4 1720 aa11.94□□□□□ -0.5
SPG11-207ENST00000558138 MAPK8IP3Q9UPT6 1336 aa11.94□□□□□ -0.5
SPG11-207ENST00000558138 NKX1-1Q15270 411 aaPredicted RBP11.94□□□□□ -0.5
SPG11-207ENST00000558138 MTHFSDQ2M296 383 aaKnown RBP11.94□□□□□ -0.5
SPG11-207ENST00000558138 PNNQ9H307 717 aaKnown RBP11.94□□□□□ -0.5
SPG11-207ENST00000558138 ITGB4P16144 1822 aa11.94□□□□□ -0.5
SPG11-207ENST00000558138 PALLDQ8WX93 1383 aa11.93□□□□□ -0.5
SPG11-207ENST00000558138 ERVV-2B6SEH9 535 aa11.93□□□□□ -0.5
SPG11-207ENST00000558138 SLC27A3Q5K4L6 730 aa11.93□□□□□ -0.5
SPG11-207ENST00000558138 PIGBQ92521 554 aa11.93□□□□□ -0.5
SPG11-207ENST00000558138 PRKRIP1Q9H875 184 aaPredicted RBP11.93□□□□□ -0.5
SPG11-207ENST00000558138 FCHSD2O94868 740 aa11.92□□□□□ -0.5
SPG11-207ENST00000558138 KCNQ4P56696 695 aa11.92□□□□□ -0.5
SPG11-207ENST00000558138 RTF1Q92541 710 aaKnown RBP11.92□□□□□ -0.5
SPG11-207ENST00000558138 RBM42Q9BTD8 480 aaKnown RBP11.92□□□□□ -0.5
SPG11-207ENST00000558138 RSPH6AQ9H0K4 717 aa11.92□□□□□ -0.5
SPG11-207ENST00000558138 MAP3K5Q99683 1374 aa11.92□□□□□ -0.5
SPG11-207ENST00000558138 GNAT3A8MTJ3 354 aa11.91□□□□□ -0.5
SPG11-207ENST00000558138 HMGB2P26583 209 aaKnown RBP11.91□□□□□ -0.5
SPG11-207ENST00000558138 PROM2Q8N271 834 aa11.91□□□□□ -0.5
SPG11-207ENST00000558138 KDM6AO15550 1401 aaPredicted RBP11.91□□□□□ -0.5
SPG11-207ENST00000558138 RNMTO43148 476 aaKnown RBP11.9□□□□□ -0.5
SPG11-207ENST00000558138 MSH5O43196 834 aa11.9□□□□□ -0.5
SPG11-207ENST00000558138 TEFQ10587 303 aa11.9□□□□□ -0.5
SPG11-207ENST00000558138 NFATC2IPQ8NCF5 419 aa11.9□□□□□ -0.5
SPG11-207ENST00000558138 ANO8Q9HCE9 1232 aaPredicted RBP11.9□□□□□ -0.5
SPG11-207ENST00000558138 TFCP2L1Q9NZI6 479 aa11.9□□□□□ -0.5
SPG11-207ENST00000558138 ATP6V1AP38606 617 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 SLC15A2Q16348 729 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 PHACTR3Q96KR7 559 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 AK7Q96M32 723 aa11.89□□□□□ -0.51
SPG11-207ENST00000558138 LGR6Q9HBX8 967 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms